Sequence
atgc intronic sequence ATGC exonic sequence...ctcttatgatgagcttactaatctaagcaagctatcccattaaaaaaatggagtgttctttgatgacataagatcttctcattcgcttctttgaatacagATATTCAATGGGGTGTTTCTTAAAGTGAACAAAGCAACAATGAACATGTTGCACAGGGATGAGCCTTGTGTGACTTATGG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv09s0054g00210.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA08G23750.2 (Glycine max), 3'ss of exon 4
-------ctcttatgatgagc-ttactaatctaagcaagctatcccattaaaaaaatggagtgttctttgatgacataagatcttctcattcgcttctttgaatacagATATTCAATGGGGTGTTTCTTAAAGTGAACAAAGCAACAATGAACATGTTGCACAGGGATGAGCCTTGTGTGACTTATGG
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atttttgagcatgcaaagagcaccattatactgaatat-ttgtatttgtattcatatagaa-gcaatttggtgatgctgatccttatc------tttttgtaaaacagATTTTCAATGGTGTATTTCTCAAAGTTAACAAAGCCACAGTGAACATGCTGCACAGAGTTGAGCCCTATGTGACTTATGG
upper sequence: Vv09s0054g00210.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA07G02270.1 (Glycine max), 3'ss of exon 4
ctcttatgatg---agcttactaatctaagcaagctat---cccattaaaaaaatggagtgttctttgatgacataagatcttctcattcgcttctttgaatacagATATTCAATGGGGTGTTTCTTAAAGTGAACAAAGCAACAATGAACATGTTGCACAGGGATGAGCCTTGTGTGACTTATGG
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tttagaggatgcagaggaaactattatactcaatgtttgtatttgttttcatataaaaaagcaatttgatgatgctgatccttatc------tttttgtaaaacagATTTTCAATGGTGTATTTCTCAAAGTTAACAAAGCCACAGTGAACATGCTGCACAGAGTTGAGCCGTATGTGACTTATGG
upper sequence: Vv09s0054g00210.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: AT2G44120.1 (Arabidopsis thaliana), 3'ss of exon 4
---------------------------------------------------------------ctcttatgatgagctt--actaatctaagcaagctatcc---------cattaaaaaaatggagtgttctttgatgacat-aagatcttctcattcgcttctttgaatacagATATTCAATGGGGTGTTTCTTAAAGTGAACAAAGCAACAATGAACATGTTGCACAGGGATGAGCCTTGTGTGACTTATGG
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gtaggtttcacagtttgttattttcatccagctatattagcctaacatatgattattgattaatatttgttatatgttcaaactaatatgtgatagttgcctgttcatcatttttaaaagagagtagaagactattgcgttgtcaagaagtttactttcgtatacatttgtgcagATCTTCAATGGTGTGTTTCTTAAGGTGAACAAGGCAACAGTAAACATGCTGCGCCGAGTTGAACCATACGTGACTTACGG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.aaatggagtgttctttgatgacataagatcttctcattcgcttctttgaatacagATATTCAATGGGGTGTTTCTTAAAGTGAACAAAGCAACAATGAACATGTTGCACAGGGATGAGCCTTGTGTGACTTATGG
ctttgat putative branch site (score: 5)
tcttctcattcgcttc putative PPT
tttgaata TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ctcttatgatgagcttactaatctaagcaagctatcccattaaaaaaatggagtgttctttgatgacataagatcttctcattcgcttctttgaatacagATATTCAATGGGGTGTTTCTTAAAGTGAACAAAGCAACAATGAACATGTTGCACAGGGATGAGCCTTGTGTGACTTATGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - ctaagca
- - - - - - - - - - - - - - - -ctatccc
- - - - - - - - - - - - - - - - - - - - -aaaaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgatgac