1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...atattttggacattgttttttcacaagcattttaaatgaggttgtgcgattgatgttttctgttgattctggtcaatttagtgctggtcgttgtttgcagTGATACTGGTAGAAAAGTTGAGGATCCTGAGTTGCTTGAGGCAATTCGTTTGACGATTATAAACAATATGCTTCAGTATCACCCG
species | Vitis vinifera |
transcript | Vv09s0018g01780.t01 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GTCTTTTTGGA-TCTTCGGGAAAGCACAACACATTTGCCATCTCCAAAGC TGATACTGGTAGAAAAGTTGAGGATCCTGAGTTGCTTGAGGCAATTCGTTTEST: gi|349823556|gb|FQ414966.1|FQ414966
genomic: GTCTTTTTGGATTCTTCGGGAAAGCACAACACATTTGCCATCACCAAAGCgtaagtccgt ... ttgtttgcagTGATACTGGTAGAAAAGTTGAGGATCCTGAGTTGCTTGAGGCAATTCGTTT
EST: GTCTTTTTGGATTCTTCAGGAAAGCACAACACATTTGCCATCACCAAAGC TGATACTGGTAGAAAAGTTGAGGATCCCGAGTTGCTTGAGGCAATTCGTTTEST: gi|28965852|gb|CB344885.1|CB344885
genomic: GTCTTTTTGGATTCTTCGGGAAAGCACAACACATTTGCCATCACCAAAGCgtaagtccgt ... ttgtttgcagTGATACTGGTAGAAAAGTTGAGGATCCTGAGTTGCTTGAGGCAATTCGTTT
EST: GTCTTTTTGGATTCTTCGGGAAAGCACAACACATTTGCCATCACCAAAGC TGATACTGGTAGAAAAGGTGAGGATCCTGAGTTGCTTGAGGCAATTCGATTEST: gi|32271352|gb|CD720511.1|CD720511
genomic: GTCTTTTTGGATTCTTCGGGAAAGCACAACACATTTGCCATCACCAAAGCgtaagtccgt ... ttgtttgcagTGATACTGGTAGAAAAGTTGAGGATCCTGAGTTGCTTGAGGCAATTCGTTT
EST: GTCTTTTTGGATTCTTCGGGAAAGCACAACACATTTGCCATCACCAAAGC TGATACTGGTAGAAAAGTTGAGGATCCTGAGTTGCTTGAGGCAATTCGTTTEST: gi|110375956|gb|EC940987.1|EC940987
genomic: GTCTTTTTGGATTCTTCGGGAAAGCACAACACATTTGCCATCACCAAAGCgtaagtccgt ... ttgtttgcagTGATACTGGTAGAAAAGTTGAGGATCCTGAGTTGCTTGAGGCAATTCGTTT
EST: GTCTTTTTGGATTCTTCGGGAAAGCACAACACATTTGCCATCACCAAAGC TGATACTGGTAGAAAAGTTGAGGATCCTGAGTTGCTTGAGGCAATTCGTTTEST: gi|110386695|gb|EC951311.1|EC951311
genomic: GTCTTTTTGGATTCTTCGGGAAAGCACAACACATTTGCCATCACCAAAGCgtaagtccgt ... ttgtttgcagTGATACTGGTAGAAAAGTTGAGGATCCTGAGTTGCTTGAGGCAATTCGTTT
EST: GTCTTTTTGGATTCTTCGGGAAAGCACAACACATTTGCCATCACCAAAGC TGATACTGGTAGAAAAGTTGAGGATCCTGAGTTGCTTGAGGCAATTCGTTTEST: gi|111125066|gb|EE253677.1|EE253677
genomic: GTCTTTTTGGATTCTTCGGGAAAGCACAACACATTTGCCATCACCAAAGCgtaagtccgt ... ttgtttgcagTGATACTGGTAGAAAAGTTGAGGATCCTGAGTTGCTTGAGGCAATTCGTTT
EST: GTCTTTTTGGATTCTTCGGGAAAGCACAACACATTTGCCATCACCAAAGC TGATACTGGTAGAAAAGTTGAGGATCCCGAGTTGCTTGAGGCAATTCGTTTEST: gi|351024111|gb|FQ423534.1|FQ423534
genomic: GTCTTTTTGGATTCTTCGGGAAAGCACAACACATTTGCCATCACCAAAGCgtaagtccgt ... ttgtttgcagTGATACTGGTAGAAAAGTTGAGGATCCTGAGTTGCTTGAGGCAATTCGTTT
EST: GTCTTTTTGGATTCTTCAGGAAAGCACAACACACTTGCCATCACCAAAGC TGATACTGGTAGAAAAGTTGAGGATCCCGAGTTGCTTGAGGCAATTCGTTTEST: gi|351031377|gb|FQ445402.1|FQ445402
genomic: GTCTTTTTGGATTCTTCGGGAAAGCACAACACATTTGCCATCACCAAAGCgtaagtccgt ... ttgtttgcagTGATACTGGTAGAAAAGTTGAGGATCCTGAGTTGCTTGAGGCAATTCGTTT
EST: GTCTTTTTGGATTCTTCAGGAAAGCACAACACATTTGCCATCACCAAAGC TGAAACTGGTAGAAAAGTTGAGGATCCCGAGTTGCTTGAEST: gi|34542620|gb|CF510852.1|CF510852
genomic: GTCTTTTTGGATTCTTCGGGAAAGCACAACACATTTGCCATCACCAAAGCgtaagtccgt ... ttgtttgcagTGATACTGGTAGAAAAGTTGAGGATCCTGAGTTGCTTGA
EST: GTCTTTTTGGATTCTTCGGGAAAGCACAACACATTTGCCATCACCAAAGC TGATACTGGTAGAAAAGTTGAGGATCCTGAGTTGCTTGAGGCAATTCGTTTEST: gi|349823504|gb|FQ414914.1|FQ414914
genomic: GTCTTTTTGGATTCTTCGGGAAAGCACAACACATTTGCCATCACCAAAGCgtaagtccgt ... ttgtttgcagTGATACTGGTAGAAAAGTTGAGGATCCTGAGTTGCTTGAGGCAATTCGTTT
EST: GTCTTTTTGGATTCTTCAGGAAAGCACAACACATTTGCCATCACCAAAGC TGATACTGGTAGAAAAGTTGAGGATCCCGAGTTGCTTGAGGCAATTCGTTTEST: gi|110372559|gb|EC936737.1|EC936737
genomic: GTCTTTTTGGATTCTTCGGGAAAGCACAACACATTTGCCATCACCAAAGCgtaagtccgt ... ttgtttgcagTGATACTGGTAGAAAAGTTGAGGATCCTGAGTTGCTTGAGGCAATTCGTTT
EST: GTCTTTTTGGATTCTTCAGGAAAGCACAACACATTTGCCATCACCAAAGC TGATACTGGTAGAAAAGTTGAGGATCCCGAGTTGCTTGAGGCAATTCGTTTEST: gi|32248427|gb|CD714246.1|CD714246
genomic: GTCTTTTTGGATTCTTCGGGAAAGCACAACACATTTGCCATCACCAAAGCgtaagtccgt ... ttgtttgcagTGATACTGGTAGAAAAGTTGAGGATCCTGAGTTGCTTGAGGCAATTCGTTT
EST: GTCTTTTTGGATTCTTCGGGAAAGCACAACACATTTGCCATCACCAAAGC TGATACTGGTAGAAAAGTTGAGGATCCTGAGTTGCTTGAGGCAATTCGTTTEST: gi|110387079|gb|EC951719.1|EC951719
genomic: GTCTTTTTGGATTCTTCGGGAAAGCACAACACATTTGCCATCACCAAAGCgtaagtccgt ... ttgtttgcagTGATACTGGTAGAAAAGTTGAGGATCCTGAGTTGCTTGAGGCAATTCGTTT
EST: GTCTTTTTGGATTCTTCGGGAAAGCACAACACATTTGCCATCACCAAAGC TGATACTGGTAGAAAAGTTGAGGATCCTGAGTTGCTTGAGGCAATTCGTTTEST: gi|351015119|gb|FQ444408.1|FQ444408
genomic: GTCTTTTTGGATTCTTCGGGAAAGCACAACACATTTGCCATCACCAAAGCgtaagtccgt ... ttgtttgcagTGATACTGGTAGAAAAGTTGAGGATCCTGAGTTGCTTGAGGCAATTCGTTT
EST: GTCTTTTTGGATTCTTCAGGAAAGCACAACACATTTGCCATCACCAAAGC TGATACTGGTAGAAAAGTTGAGGATCCCGAGTTGCTTGAGGCAATTCGTTTEST: gi|351022170|gb|FQ438755.1|FQ438755
genomic: GTCTTTTTGGATTCTTCGGGAAAGCACAACACATTTGCCATCACCAAAGCgtaagtccgt ... ttgtttgcagTGATACTGGTAGAAAAGTTGAGGATCCTGAGTTGCTTGAGGCAATTCGTTT
EST: GTCTTTTTGGATTCTTCAGGAAAGCACAACACATTTGCCATCACCAAAGC TGATACTGGGTAGAAAAGTTTGAGGATCCCGAGTTGCTTGAGGGCA-TTCGEST: gi|110390868|gb|EC955807.1|EC955807
genomic: GTCTTTTTGGATTCTTCGGGAAAGCACAACACATTTGCCATCACCAAAGCgtaagtccgt ... ttgtttgcagTGATACTGG-TAGAAAAGTT-GAGGATCCTGAGTTGCTTGAGG-CAATTCG
EST: GTCTTTTTGGATTCTTCAGGAAAGCACAACACATTTGCCATCACCAAAGC TGATACTGGTAGAAAAGTTGAGGATCCCGAGTTGCTTGAGGCAATTCGTTTEST: gi|29784413|gb|CB345109.2|CB345109
genomic: GTCTTTTTGGATTCTTCGGGAAAGCACAACACATTTGCCATCACCAAAGCgtaagtccgt ... ttgtttgcagTGATACTGGTAGAAAAGTTGAGGATCCTGAGTTGCTTGAGGCAATTCGTTT
EST: GTCTTTTTGGATTCTTCGGGAAAGCACAACACATTTGCCATCACCAAAGC TGATACTGGTAGAAAAGTTGAGGATCCTGAGTTGCTTGAGGCAATTCGTTTEST: gi|32268834|gb|CD717993.1|CD717993
genomic: GTCTTTTTGGATTCTTCGGGAAAGCACAACACATTTGCCATCACCAAAGCgtaagtccgt ... ttgtttgcagTGATACTGGTAGAAAAGTTGAGGATCCTGAGTTGCTTGAGGCAATTCGTTT
EST: GTCTTTTTGGATTCTTCGGGAAAGCACAACACATTTGCCATCACCAAAGC TGATACTGGTAGAAAAGTTGAGGATCCTGAGTTGCTTGAGGCAATTCGTTTEST: gi|110385943|gb|EC950505.1|EC950505
genomic: GTCTTTTTGGATTCTTCGGGAAAGCACAACACATTTGCCATCACCAAAGCgtaagtccgt ... ttgtttgcagTGATACTGGTAGAAAAGTTGAGGATCCTGAGTTGCTTGAGGCAATTCGTTT
EST: GTCTTTTTGGATTCTTCAGGAAAGCACAACACATTTGCCATCACCAAAGC TGATACTGGTAGAAAAGTTGAGGATCCCGAGTTGCTTGAGGCAATTCGTTTEST: gi|110413183|gb|EC978960.1|EC978960
genomic: GTCTTTTTGGATTCTTCGGGAAAGCACAACACATTTGCCATCACCAAAGCgtaagtccgt ... ttgtttgcagTGATACTGGTAGAAAAGTTGAGGATCCTGAGTTGCTTGAGGCAATTCGTTT
EST: GTCTTTTTGGATTCTTCAGGAAAGCACAACACATTTGCCATCACCAAAGC TGATACTGGTAGAAAAGTTGAGGATCCCGAGTTGCTTGAGGCAATTCGTTTEST: gi|29784391|gb|CB345050.2|CB345050
genomic: GTCTTTTTGGATTCTTCGGGAAAGCACAACACATTTGCCATCACCAAAGCgtaagtccgt ... ttgtttgcagTGATACTGGTAGAAAAGTTGAGGATCCTGAGTTGCTTGAGGCAATTCGTTT
EST: GTCTTTTTGGATTCTTCGGGAAAGCACAACACATTTGCCATCACCAAAGC TGATACTGGTAGAAAAGTTGAGGATCCTGAGTTGCTTGAGGCAATTCGTTTEST: gi|32269676|gb|CD718835.1|CD718835
genomic: GTCTTTTTGGATTCTTCGGGAAAGCACAACACATTTGCCATCACCAAAGCgtaagtccgt ... ttgtttgcagTGATACTGGTAGAAAAGTTGAGGATCCTGAGTTGCTTGAGGCAATTCGTTT
EST: GTCTTTTTGGATTCTTCGGGAAAGCACAACACATTTGCCATCACCAAAGC TGATACTGGTAGAAAAGTTGAGGATCCTGAGTTGCTTGAGGCAATTCGTTTEST: gi|110372429|gb|EC936593.1|EC936593
genomic: GTCTTTTTGGATTCTTCGGGAAAGCACAACACATTTGCCATCACCAAAGCgtaagtccgt ... ttgtttgcagTGATACTGGTAGAAAAGTTGAGGATCCTGAGTTGCTTGAGGCAATTCGTTT
EST: GTCTTTTTGGATTCTTCAGGAAAGCACAACACATTTGCCATCACCAAAGC TGATACTGGTAGAAAAGTTGAGGATCCCGAGTTGCTTGAGGCAATTCGTTTEST: gi|110383897|gb|EC948302.1|EC948302
genomic: GTCTTTTTGGATTCTTCGGGAAAGCACAACACATTTGCCATCACCAAAGCgtaagtccgt ... ttgtttgcagTGATACTGGTAGAAAAGTTGAGGATCCTGAGTTGCTTGAGGCAATTCGTTT
EST: GTCTTTTTGGATTCTTCGGGAAAGCACAACACATTTGCCATCACCAAAGC TGATACTGGTAGAAAAGTTGAGGATCCTGAGTTGCTTGAGGCAATTCGTTTEST: gi|110687744|gb|EE065504.1|EE065504
genomic: GTCTTTTTGGATTCTTCGGGAAAGCACAACACATTTGCCATCACCAAAGCgtaagtccgt ... ttgtttgcagTGATACTGGTAGAAAAGTTGAGGATCCTGAGTTGCTTGAGGCAATTCGTTT
EST: GTCTTTTTGGATTCTTCGGGAAAGCACAACACATTTGCCATCACCAAAGC TGATACTGGTAGAAAAGTTGAAGATCCTGAGTTTGCT-GANNGCA-TTCGTEST: gi|29785638|gb|CB342854.2|CB342854
genomic: GTCTTTTTGGATTCTTCGGGAAAGCACAACACATTTGCCATCACCAAAGCgtaagtccgt ... ttgtttgcagTGATACTGGTAGAAAAGTTGAGGATCCTGAGTT-GCTTGAG-GCAATTCGT
EST: GTCTTTTTGGATTCTTCAGGAAAGCACAACACATTTGCCATCACCAAAGC TGATACTGGTAGAAAAGTTGAGGATCCCGAGTTGCTTGAGGCAATTCGTTT
genomic: GTCTTTTTGGATTCTTCGGGAAAGCACAACACATTTGCCATCACCAAAGCgtaagtccgt ... ttgtttgcagTGATACTGGTAGAAAAGTTGAGGATCCTGAGTTGCTTGAGGCAATTCGTTT
gcgattgatgttttctgttgattctggtcaatttagtgctggtcgttgtttgcagTGATACTGGTAGAAAAGTTGAGGATCCTGAGTTGCTTGAGGCAATTCGTTTGACGATTATAAACAATATGCTTCAGTATCACCCG
tgttgat putative branch site (score: 4)
tcaattta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atattttggacattgttttttcacaagcattttaaatgaggttgtgcgattgatgttttctgttgattctggtcaatttagtgctggtcgttgtttgcagTGATACTGGTAGAAAAGTTGAGGATCCTGAGTTGCTTGAGGCAATTCGTTTGACGATTATAAACAATATGCTTCAGTATCACCCG
- - - - - - - - - - -cacaagc
- - - - - - - - - - - - - - - - - - - -ggttgtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -attctgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gtgctgg