Sequence
atgc intronic sequence ATGC exonic sequence...agctttctcttcattgctagctaagatgttaagtcatctaagcgcctttgagttctgagagtttcattgattaattacattggtattttactctctacagTACACTTGGACAGGGGCTACAAACCAGTACTTATGCTGGAGAGGTTTTGTTTTCAATAACACTAGCTATTTTGGGGCTTATCCTTATGGCACTACTGATT
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv09s0018g00410.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA07G02560.1 (Glycine max), 3'ss of exon 4
-agctttctcttcattgctagctaagatgttaagtcatctaagcgcctttgagttctgagagtttcattgattaattacattggtattttactctctacagTACACTTGGACAGGGGCTACAAACCAGTACTTATGCTGGAGAGGTTTTGTTTTCAATAACACTAGCTATTTTGGGGCTTATCCTTATGGCACTACTGATT
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ttactgcctgcatctaccacgtttgcatttcaataacatgaaattgctgtatgttcccaagttttacaagcctaagcaccttc-tgttttgcgttccacagTACACTTGGTCAGGGGCTTCTAACCAGTACCTACCCTGGAGAGGTTATGTTTTCCATTGTAATAGCTATTATGGGACTTATCCTTTTTGCTCTTCTGATT
upper sequence: Vv09s0018g00410.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA08G23460.1 (Glycine max), 3'ss of exon 4
agctttctcttcattgctagctaagatgttaa-gtcatctaagcgcctttgagttctgagagtttcattgattaattacattggtattttactctctacagTACACTTGGACAGGGGCTACAAACCAGTACTTATGCTGGAGAGGTTTTGTTTTCAATAACACTAGCTATTTTGGGGCTTATCCTTATGGCACTACTGATT
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tactgcctgcacctaggtcgtgtgcatttcaataacatgaaaattgctatatgttcccaagttttacaagcctaagcaccttc-tgttttgcgttccacagTACACTTGGTCAGGGACTTCTAACCAGTACCTACCCTAAAGAGGTCTTGTTTTCCATAGTAATAGCTATTATGGGGCTTATCCTTTTTGCTCTTCTGATT atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ctttgagttctgagagtttcattgattaattacattggtattttactctctacagTACACTTGGACAGGGGCTACAAACCAGTACTTATGCTGGAGAGGTTTTGTTTTCAATAACACTAGCTATTTTGGGGCTTATCCTTATGGCACTACTGATT
gattaat putative branch site (score: 3)
ttttactctct putative PPT
attaattacattggta TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
agctttctcttcattgctagctaagatgttaagtcatctaagcgcctttgagttctgagagtttcattgattaattacattggtattttactctctacagTACACTTGGACAGGGGCTACAAACCAGTACTTATGCTGGAGAGGTTTTGTTTTCAATAACACTAGCTATTTTGGGGCTTATCCTTATGGCACTACTGATT
- - - - - -cattgct