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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagcctaaacttgacaatcccacctgtgattcgtctttttaggaacttgtgtcaaggtccggattgaaattgtccattgagttttgcttagcattctaagctgttttctgcaatttgtttcctttcttcagGTGCAAAGAAGTGTTGAAGATCAATCTATATTGGTAGCAACCTACGAAGGCGAGCATAATCATCCACACCCTGGTCGAATTGAGCCCACATCAGGTGCAA

Basic information

species Vitis vinifera
transcript Vv09s0018g00240.t01
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv09s0018g00240.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA15G00570.1 (Glycine max), 3'ss of exon 4
gtgagcctaaacttgacaatcccacctgtgattcgtctttttaggaacttgtgtcaaggtccggattgaaattgtccattgagttttgcttagcattctaagctgttttctgcaatttgtttcctttcttcagGTGCAAAGAAGTGTTGAAGATCAATCTATATTGGTAGCAACCTACGAAGGCGAGCATAATCATCCACACCCTGGTCGAATTGAGCCCACATCAGGTGCAA
                       |  | | |  |  ||  ||| |||| |   | |   | |  | |  | |     | ||  |      |    ||   | |||| || ||| |||   ||   ||| |||||||||||||||||| || ||||||||| |  |||| ||||| || ||||| ||||| |||||| ||||||||  || ||| |||   ||| ||||| | |
---------------------gtaaatctaa--cagctaattaagaacgtac-taagcattcaaactccactaagtaactggatcacaagttaagtt---aactgtgtt-tgctattcaatt---ttcatcagGTGCAAAGAAGTGTGGATGATCAATCTGTTCTGGTTGCAACTTATGAAGGAGAGCACAATCATACACACCCTTCTCAAATGGAGGTAACAACAGGTTCCA

upper sequence: Vv09s0018g00240.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA13G44730.1 (Glycine max), 3'ss of exon 4
gtgagcctaaacttgacaatcccacctgtgattcgtctttttaggaacttgtgtcaaggtccggattgaaattgtcc--attgagtt-ttgcttagcattctaagctgttttctgcaatttgtttcctttcttcagGTGCAAAGAAGTGTTGAAGATCAATCTATATTGGTAGCAACCTACGAAGGCGAGCATAATCATCCACACCCTGGTCGAATTGAGCCCACATCAGGTGCAA
                                  ||   | ||  | ||  |    |  |  | ||| ||| |   |  ||| |||   ||  |  ||  ||||| |  ||       ||  |     ||| | |||||||||||||||| || ||||||||| |  |||| ||||| || ||||| ||||| |||||||| ||||||  || ||| |||   ||| ||||  | |
----------------------------------gtaaatctaacagctaattaagaactaggcattcaaactccactaattaagtaactggatcacaggctaagttaattgtgcttgttattcaatattcattagGTGCAAAGAAGTGTGGATGATCAATCTGTTCTGGTTGCAACTTATGAAGGAGAGCACAATCATCCTCACCCTTCTCAAATGGAGGTAACAACAGGCTCCA

upper sequence: Vv09s0018g00240.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA07G02630.1 (Glycine max), 3'ss of exon 4
gtgagcctaaacttgacaatcccacctgtgattcgtctttttaggaacttgtgtcaaggtccggat-tgaaattgtccattgagttttgcttagcattctaagctgttttctgcaatttgtttcctttcttcagGTGCAAAGAAGTGTTGAAGATCAATCTATATTGGTAGCAACCTACGAAGGCGAGCATAATCATCCACA---CCCTGGTCGAATTGAGCCCACATCAGGTGCAA
|| |   || |  | |  | || |    | | | ||   |  ||||| | || |   |||  || |    |  |||   | | |   ||  |  ||  ||||| | | || ||   |||| ||   || ||||||||||||||||||| || ||||||||| |  |||| || || || ||||| ||||| |||||||| ||     ||   |  || ||  | |||||||||    
gtaaatatata--taatcaaccaagtgctaactagtaact--aggaaatggttt---ggtttggttactcacatgttagtagggaaatggatctcaagctaagtt-tgttttgtt-tttggtttggttattcagGTGCAAAGAAGTGTGGATGATCAATCTGTTCTGGTTGCTACTTATGAAGGGGAGCACAATCATCCTCAGTTTTCTTCCCAGATGGAAGCAACATCAGGTT---

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|349818243|gb|FQ409018.1|FQ409018
EST:     GAGCCTACTTCAAATGCTCTTTTGCTCCTAGCTGCCCTGTCAAGAAGAAG                         GTGCAAAGAAGTGTTGAAGATCAATCTATATTGGTAGCAACCTACGAAGGC
genomic: GAGCCTACTTCAAATGCTCTTTTGCTCCTAGCTGCCCTGTCAAGAAGAAGgtgagcctaa ... ctttcttcagGTGCAAAGAAGTGTTGAAGATCAATCTATATTGGTAGCAACCTACGAAGGC
EST: gi|349810369|gb|FQ401815.1|FQ401815
EST:     GAGCCTACTTCAAATGCTCTTTTGCTCCTAGCTGCCCTGTCAAGAAGAAG                         GTGCAAAAAAGTGTTGAAAATCAATCTATATTGGTA
genomic: GAGCCTACTTCAAATGCTCTTTTGCTCCTAGCTGCCCTGTCAAGAAGAAGgtgagcctaa ... ctttcttcagGTGCAAAGAAGTGTTGAAGATCAATCTATATTGGTA
EST: gi|161713939|gb|FC062887.1|FC062887
EST:     GAGCCTACTTCAAATGCTCTTTTGCTCCTAGCTGCCCTGTCAAGAAGAAG                         GTGCAAAGAAGTGTTGAAGATCAATCTATATTGGTAGCAACCTACGAAGGC
genomic: GAGCCTACTTCAAATGCTCTTTTGCTCCTAGCTGCCCTGTCAAGAAGAAGgtgagcctaa ... ctttcttcagGTGCAAAGAAGTGTTGAAGATCAATCTATATTGGTAGCAACCTACGAAGGC
EST: gi|351054947|gb|FQ440286.1|FQ440286
EST:     GAGTCTACTTCAAATGCTCTTTTGCTCCTAGCTGCCCTGTCAAGAAGAAG                         GTGCAAAGAAGTGTTGAAGATCAATCTATATTGGTAGCAACCTACGAAGGC
genomic: GAGCCTACTTCAAATGCTCTTTTGCTCCTAGCTGCCCTGTCAAGAAGAAGgtgagcctaa ... ctttcttcagGTGCAAAGAAGTGTTGAAGATCAATCTATATTGGTAGCAACCTACGAAGGC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttgagttttgcttagcattctaagctgttttctgcaatttgtttcctttcttcagGTGCAAAGAAGTGTTGAAGATCAATCTATATTGGTAGCAACCTACGAAGGCGAGCATAATCATCCACACCCTGGTCGAATTGAGCCCACATCAGGTGCAA
                                     tttgtttcctttcttc  CT-rich tract
                                   aatttgttt  TA-rich tract