1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtatttgtttcagcatctgttgctccacttatcttgtcatagtcacttatgcatgctaattttattgttttggatcttccagAGACCAGATCTTGTTATATTTGTTATGGATAGCAGCATTGGTCAAGCTGCATTTGATCAAGCTCAAGCATTCAGGCAAAGTGTTGCAGTTGGAGCTGTGA
species | Vitis vinifera |
transcript | Vv09s0002g07290.t01 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: AACAGGAGGCTGCTCTCTTTGAAGAAATGCGTCAAGTTTCCGAAGCAACG AGACCAGATCTTGTTATATTTGTTATGGATAGCAGCATTGGTCAAGCTGCAEST: gi|161709514|gb|FC059741.1|FC059741
genomic: AACAGGAGGCTGCTCTCTTTGAAGAAATGCGTCAAGTTTCCGAAGCAACGgtatttgttt ... gatcttccagAGACCAGATCTTGTTATATTTGTTATGGATAGCAGCATTGGTCAAGCTGCA
EST: AACAGGAGGCTGCTCTCTTTGAAGAAATGCGTCAAGTTTCCGAAGCAACG AGACCAGATCTTGTTATATTTGTTATGGATAGCAGCATTGGTCAAGCTGCAEST: gi|71859048|gb|DT008103.1|DT008103
genomic: AACAGGAGGCTGCTCTCTTTGAAGAAATGCGTCAAGTTTCCGAAGCAACGgtatttgttt ... gatcttccagAGACCAGATCTTGTTATATTTGTTATGGATAGCAGCATTGGTCAAGCTGCA
EST: AACAGGAGGCTGCTCTCTTTGAAGAAATGCGTCAAGTTTCCGAAGCAACG AGACCAGATCTTGTTATATTTGTTATGGATAGCAGCATTGGTCAAGCTGCA
genomic: AACAGGAGGCTGCTCTCTTTGAAGAAATGCGTCAAGTTTCCGAAGCAACGgtatttgttt ... gatcttccagAGACCAGATCTTGTTATATTTGTTATGGATAGCAGCATTGGTCAAGCTGCA
cttatcttgtcatagtcacttatgcatgctaattttattgttttggatcttccagAGACCAGATCTTGTTATATTTGTTATGGATAGCAGCATTGGTCAAGCTGCATTTGATCAAGCTCAAGCATTCAGGCAAAGTGTTGCAGTTGGAGCTGTGA
tgctaat putative branch site (score: 2)
tcttcc putative PPT
taattttattgtttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatttgtttcagcatctgttgctccacttatcttgtcatagtcacttatgcatgctaattttattgttttggatcttccagAGACCAGATCTTGTTATATTTGTTATGGATAGCAGCATTGGTCAAGCTGCATTTGATCAAGCTCAAGCATTCAGGCAAAGTGTTGCAGTTGGAGCTGTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT