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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaattcgaacaggatattaagtatttatttacttttcttcaatgagaaaattgagctattgcaaacttagaaagtgttgttattcttcttgttgccttgcagTTTAAATTGGCAGCACCAGCTTTGCAAAAATCCCAGGCCAAATCCTGACATAAAAACTCTCTTTACAGACCATACTTGTGGGCAACCAAATGGATCTCGG

Basic information

species Vitis vinifera
transcript Vv09s0002g07020.t01
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv09s0002g07020.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: PP1S316_34V6.1 (Physcomitrella patens), 3'ss of exon 4
-----------------------------------------------------------------------gtaattcgaacaggatattaagtatt-tatttacttttcttcaatgagaaaattgagctattgcaaacttagaaagtgttgttattcttcttgttgccttgcagTTTAAATTGGCAGCACCAGCTTTGCAAAAATCCCAGGCCAAATCCTGACATAAAAACTCTCTTTACAGACCATACTTGTGGGCAACCAAATGGATCTCGG
                                                                       |    | |     |  ||  |  |    | ||  | || | |   ||    |      |||||  |  | |   | | || |   |    || |    ||||||| | ||||||||||| |||||||||||||| || ||||| ||||||||||| || || ||||| |  || || || || ||||  || |||||  |||| 
gtaataaatagcccatgtgttctaccttgagctcctcaagattatccaggtggtggcttctgcttgtagttgagcattgttggtggcatgcaacaccgcactttgtattttccttcgaattcaccagagtattgaca--tgaaggatttttatgtgttcgtttatctatttgcagTCTCAATTGGCAGCATCAGCTTTGCAAAAACCCAAGGCCGAATCCTGACATTAAGACACTCTTCATTGATCACACATGCGGGCCTCCTAATGGGGCTCGA

upper sequence: Vv09s0002g07020.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: PP1S99_260V6.1 (Physcomitrella patens), 3'ss of exon 4
------gtaattcgaacaggatattaagtatttatttacttttcttcaatgagaaaattgagctattgcaaacttagaaagtgttgttattcttcttgttgccttgcagTTTAAATTGGCAGCACCAGCTTTGCAAAAATCCCAGGCCAAATCCTGACATAAAAACTCTCTTTACAGACCATACTTGTGGGCAACCAAATGGATCTCGG
          |||        | |||| ||||  |||  || |  | |||||||  ||| |  ||       |||      | ||||  || || ||||| || |||||| | || |||||||||||||||||||| || || ||||| ||||||||||| || || || ||||  || || |||||||| |  || |||||  | || 
ttttcaacgtttcatgtgttgttttaaatattcttttcattgtacttaatgaga--atttaaataagaattgctt------tcttgtgcttatt-ttgttaccctgcagTCTCAACTGGCAGCACCAGCTTTGCAAGAACCCAAGGCCGAATCCTGACATCAAGACACTGTTTATTGATCACACTTGTGGACCTCCTAATGGTGCCCGT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aaattgagctattgcaaacttagaaagtgttgttattcttcttgttgccttgcagTTTAAATTGGCAGCACCAGCTTTGCAAAAATCCCAGGCCAAATCCTGACATAAAAACTCTCTTTACAGACCATACTTGTGGGCAACCAAATGGATCTCGG
                                   ttcttcttgttgcctt  CT-rich tract
                             ttgttatt  TA-rich tract