1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...actttcagttatttttcttcaaattttataaatcttatagtaggttagaatgattcaacctccaatggagtcttacatgctcgtaatgcttctgttctagATTGAGATATTACTCGGAAAGACTGCAAACTTTGATGAGCTGATGGCGGCTGCAGCAGAAGAGAGGGAAGCTGGAGATGTTGAGGAGCAGAGCTGAGGAG
species | Vitis vinifera |
transcript | Vv09s0002g06460.t01 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: CAGTCGATATGAAAGATGAATCTAGGGGAAGACCTGTCCAAAAAGCCAAG ATTGAGATATTACTCGGAAAGACTGCAAACTTTGATGAGCTGATGGCGGCTEST: gi|110380681|gb|EC945965.1|EC945965
genomic: CAGTCGATATGAAAGATGAATCTAGGGGAAGACCTGTCCAAAAAGCCAAGgtaagtttcc ... tctgttctagATTGAGATATTACTCGGAAAGACTGCAAACTTTGATGAGCTGATGGCGGCT
EST: CGGTCGATATGAAAGATGAATCTAGGGGAAGACCTGTCCAAAAAGCCAAG ATTGAGATATTACTCGGAAAGACAT-CAAACTTTGATGAGCTGATGGCAGCEST: gi|349823577|gb|FQ414987.1|FQ414987
genomic: CAGTCGATATGAAAGATGAATCTAGGGGAAGACCTGTCCAAAAAGCCAAGgtaagtttcc ... tctgttctagATTGAGATATTACTCGGAAAGAC-TGCAAACTTTGATGAGCTGATGGCGGC
EST: CAGTCGATATGAAAGATGAATCTAGGGGAAGACCTGTCCAAAAAGCCAAG ATTGAGATATTACTCGGAAAGACTGCAAACTTTGATGAGCTGATGGCGGCTEST: gi|110378701|gb|EC943845.1|EC943845
genomic: CAGTCGATATGAAAGATGAATCTAGGGGAAGACCTGTCCAAAAAGCCAAGgtaagtttcc ... tctgttctagATTGAGATATTACTCGGAAAGACTGCAAACTTTGATGAGCTGATGGCGGCT
EST: CAGTCGATATGAAAGATGAATCTAGGGGAAGACCTGTCCAAAAAGCCAAG ATTGAGATATTACTCGGAAAGACTGCAAACTTTGATGAGCTGATGGCGGCTEST: gi|30132619|gb|CB917958.1|CB917958
genomic: CAGTCGATATGAAAGATGAATCTAGGGGAAGACCTGTCCAAAAAGCCAAGgtaagtttcc ... tctgttctagATTGAGATATTACTCGGAAAGACTGCAAACTTTGATGAGCTGATGGCGGCT
EST: CAGTCGATATGAAAGATGAATCTAGGGGAAGACCTGTCCAAAAAGCCAAG ATTGAGATATTACTCGGAAAGACTGCAAACTTTGATGAGCTGATGGCGGCTEST: gi|110418470|gb|EC984627.1|EC984627
genomic: CAGTCGATATGAAAGATGAATCTAGGGGAAGACCTGTCCAAAAAGCCAAGgtaagtttcc ... tctgttctagATTGAGATATTACTCGGAAAGACTGCAAACTTTGATGAGCTGATGGCGGCT
EST: CAGTCGATATGAAAGATGAATCTAGGGGAAGACCTGTCCAAAAAGCCAAG ATTGAGATATTACTCGGAAAGACTGCAAACTTTGATGAGCTGATGGCGGCTEST: gi|110378310|gb|EC943434.1|EC943434
genomic: CAGTCGATATGAAAGATGAATCTAGGGGAAGACCTGTCCAAAAAGCCAAGgtaagtttcc ... tctgttctagATTGAGATATTACTCGGAAAGACTGCAAACTTTGATGAGCTGATGGCGGCT
EST: CGGTCGATATGAAAGATGAATCTAGGGGAAGACCTGTCCAAAAAGCCAAG ATTGAGATATTACTCGGAAAGACAT-CAAACTTTGATGAGCTGATGGCAGCEST: gi|32267782|gb|CD716941.1|CD716941
genomic: CAGTCGATATGAAAGATGAATCTAGGGGAAGACCTGTCCAAAAAGCCAAGgtaagtttcc ... tctgttctagATTGAGATATTACTCGGAAAGAC-TGCAAACTTTGATGAGCTGATGGCGGC
EST: CAGTCGATATGAAAGATGAATCTAGGGGAAGACCTGTCCAAAAAGCCAAG ATTGAGATATTACTCGGAAAGACTGCAAACTTTGATGAGCTGATGGCGGCTEST: gi|110382504|gb|EC946801.1|EC946801
genomic: CAGTCGATATGAAAGATGAATCTAGGGGAAGACCTGTCCAAAAAGCCAAGgtaagtttcc ... tctgttctagATTGAGATATTACTCGGAAAGACTGCAAACTTTGATGAGCTGATGGCGGCT
EST: CGGTCGATATGAAAGATGAATCTAGGGGAAGACCTGTCCAAAAAGCCAAG ATTGAGATATTACTCGGAAAGACAT-CAAACTTTGATGAGCTGATGGCAGCEST: gi|26266752|gb|CA817815.1|CA817815
genomic: CAGTCGATATGAAAGATGAATCTAGGGGAAGACCTGTCCAAAAAGCCAAGgtaagtttcc ... tctgttctagATTGAGATATTACTCGGAAAGAC-TGCAAACTTTGATGAGCTGATGGCGGC
EST: CAGTCGATATGAAAGATGAATCTAGGGGAAGACCTGTTCAAAAAGCCAAG ATTGAGATATTACTCGGAAAGACTGCAAACTTTGATGAGCTGATGGCGGCTEST: gi|27586722|gb|CB009417.1|CB009417
genomic: CAGTCGATATGAAAGATGAATCTAGGGGAAGACCTGTCCAAAAAGCCAAGgtaagtttcc ... tctgttctagATTGAGATATTACTCGGAAAGACTGCAAACTTTGATGAGCTGATGGCGGCT
EST: CGGTCGATATGAAAGATGAATCTAGGGGAAGACCTGTCCAAAAAGCCAAG ATTGAGATATTACTCGGAAAGACAT-CAAACTTTGATGAGCTGATGGCAGCEST: gi|110369607|gb|EC933771.1|EC933771
genomic: CAGTCGATATGAAAGATGAATCTAGGGGAAGACCTGTCCAAAAAGCCAAGgtaagtttcc ... tctgttctagATTGAGATATTACTCGGAAAGAC-TGCAAACTTTGATGAGCTGATGGCGGC
EST: AAGATGAATCTAGGGGAAGACCTGTCCAAAAAGCCAAG ATTGAGATATTACTCGGAAAGACTGCAAACTTTGATGAGCTGATGGCGGCTEST: gi|32271236|gb|CD720395.1|CD720395
genomic: AAGATGAATCTAGGGGAAGACCTGTCCAAAAAGCCAAGgtaagtttcc ... tctgttctagATTGAGATATTACTCGGAAAGACTGCAAACTTTGATGAGCTGATGGCGGCT
EST: CAGTCGATATGAAAGATGAATCTAGGGGAAGACCTGTCCAAAAAGCCAAG ATTGAGATATTACTCGGAAAGACTGCAAACTTTGATGAGCTGATGGCGGCTEST: gi|110695756|gb|EE074133.1|EE074133
genomic: CAGTCGATATGAAAGATGAATCTAGGGGAAGACCTGTCCAAAAAGCCAAGgtaagtttcc ... tctgttctagATTGAGATATTACTCGGAAAGACTGCAAACTTTGATGAGCTGATGGCGGCT
EST: CAGTCGATATGAAAGATGAATCTAGGGGAAGACCTGTCCAAAAAGCCAAG ATTGAGATATTACTCGGAAAGACTGCAAACTTTGATGAGCTGATGGCGGCTEST: gi|110392645|gb|EC958212.1|EC958212
genomic: CAGTCGATATGAAAGATGAATCTAGGGGAAGACCTGTCCAAAAAGCCAAGgtaagtttcc ... tctgttctagATTGAGATATTACTCGGAAAGACTGCAAACTTTGATGAGCTGATGGCGGCT
EST: CAGTCGATATGAAAGATGAATCTAGGGGAAGACCTGTCCAAAAAGCCAAG ATTGAGATATTACTCGGAAAGACTGCAAACTTTGATGAGCTGATGGCGGCTEST: gi|71877464|gb|DT026519.1|DT026519
genomic: CAGTCGATATGAAAGATGAATCTAGGGGAAGACCTGTCCAAAAAGCCAAGgtaagtttcc ... tctgttctagATTGAGATATTACTCGGAAAGACTGCAAACTTTGATGAGCTGATGGCGGCT
EST: CAGTCGATATGAAAGATGAATCTAGGGGAAGACCTGTCCAAAAAGCCAAG ATTGAGATATTACTCGGAAAGACTGCAAACTTTGATGAGCTGATGGCGGCT
genomic: CAGTCGATATGAAAGATGAATCTAGGGGAAGACCTGTCCAAAAAGCCAAGgtaagtttcc ... tctgttctagATTGAGATATTACTCGGAAAGACTGCAAACTTTGATGAGCTGATGGCGGCT
tagaatgattcaacctccaatggagtcttacatgctcgtaatgcttctgttctagATTGAGATATTACTCGGAAAGACTGCAAACTTTGATGAGCTGATGGCGGCTGCAGCAGAAGAGAGGGAAGCTGGAGATGTTGAGGAGCAGAGCTGAGGAG
gtcttac putative branch site (score: 3)
cttctgttct putative PPT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| actttcagttatttttcttcaaattttataaatcttatagtaggttagaatgattcaacctccaatggagtcttacatgctcgtaatgcttctgttctagATTGAGATATTACTCGGAAAGACTGCAAACTTTGATGAGCTGATGGCGGCTGCAGCAGAAGAGAGGGAAGCTGGAGATGTTGAGGAGCAGAGCTGAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -catgctc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gtaatgc