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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtagttaatcctctttatttattaatttacttgtttgttgtatattttaatttatttataggtcatggctctctttttgtattgtacatagaagtttgatgccttggtttcctgtactaaagtcataaatatggtctatagattttaaatattttccatttctaatctgtctttttttttactcatctcattagCTTGGAGGGTTTCGGCTGTATATGATGAGGGACTTAGCTGGGAAAATTGAGCCGACACCTCCCCCAAGTTCCACTCCTGTCACTGTCAGTCTGAATGATG

Basic information

species Vitis vinifera
transcript Vv09s0002g06120.t01
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110695118|gb|EE072767.1|EE072767
EST:     TTCTCTCAGAAATATGTGATACTACTTCAATAGCGGAGTTTGAATTGAAA                         CTTGGAGGGTTTCGGCTGTATATGATGAGGGACTTAGCTGGGAAAATTGAG
genomic: TTCTCTCAGAAATATGTGATACTACTTCAATAGCGGAGTTTGAATTGAAAgtaagtagtt ... atctcattagCTTGGAGGGTTTCGGCTGTATATGATGAGGGACTTAGCTGGGAAAATTGAG
EST: gi|30303221|gb|CB980015.1|CB980015
EST:     TTCTCTCAGAAATATGTGATACTACTTCAATAGCGGAGTTTGAATTGAAA                         CTTGGAGGGTTTCGGCTGTATATGATGAGGGACTTAGCTGGGAAAATTGAG
genomic: TTCTCTCAGAAATATGTGATACTACTTCAATAGCGGAGTTTGAATTGAAAgtaagtagtt ... atctcattagCTTGGAGGGTTTCGGCTGTATATGATGAGGGACTTAGCTGGGAAAATTGAG
EST: gi|110700778|gb|EE077729.1|EE077729
EST:     TTCTCTCAGAAATATGTGATACTACTTCAATAGCGGAGTTTGAATTGAAA                         CTTGGAGGGTTTCGGCTGTATATGATGAGGGACTTAGCTGGGAAAATTGAG
genomic: TTCTCTCAGAAATATGTGATACTACTTCAATAGCGGAGTTTGAATTGAAAgtaagtagtt ... atctcattagCTTGGAGGGTTTCGGCTGTATATGATGAGGGACTTAGCTGGGAAAATTGAG
EST: gi|110693215|gb|EE069249.1|EE069249
EST:     TTCTCTCAGAAATATGTGATACTACTTCAATAGCGGAGTTTGAATTGAAA                         CTTGGAGGGTTTCGGCTGTATATGATGAGGGACTTAGCTGGGAAAATTGAG
genomic: TTCTCTCAGAAATATGTGATACTACTTCAATAGCGGAGTTTGAATTGAAAgtaagtagtt ... atctcattagCTTGGAGGGTTTCGGCTGTATATGATGAGGGACTTAGCTGGGAAAATTGAG
EST: gi|294964388|gb|GW838191.1|GW838191
EST:     TTCTCTCAGAAATATGTGATACTACTTCAATAGCGGAGTTTGAATTGAAA                         CTTGGAGGGTTTCGGTTGTATATGATGAGGGACTTAGCTG
genomic: TTCTCTCAGAAATATGTGATACTACTTCAATAGCGGAGTTTGAATTGAAAgtaagtagtt ... atctcattagCTTGGAGGGTTTCGGCTGTATATGATGAGGGACTTAGCTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agattttaaatattttccatttctaatctgtctttttttttactcatctcattagCTTGGAGGGTTTCGGCTGTATATGATGAGGGACTTAGCTGGGAAAATTGAGCCGACACCTCCCCCAAGTTCCACTCCTGTCACTGTCAGTCTGAATGATG
                    ttctaat  putative branch site (score: 2)
                          tctgtcttttttttta  CT-rich tract
     ttaaatattttccatt  TA-rich tract