Skip to another splice site:
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 5'  3'   		2  
 5'  3'   		3  
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 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagcctctgtcacttactctctttaattattattttccatttatttatttcttacaattaattaatttgcatcccattaaattctttctaattttggttgctctgttatttatttatttgtttttcgtctgcagAGGATGAGCATGATGTTGTCTGGTTTTGGCTGGAGAAAGGCAAGTCACATGAATGCCCTGTGTGCTCACAGTATTTCACG

Basic information

species Vitis vinifera
transcript Vv09s0002g06000.t01
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv09s0002g06000.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: LOC_Os06g05080.1 (Oryza sativa), 3'ss of exon 4
-----------------gtaagcctctgtcacttactctctttaattattattttccatttatttatttcttacaattaattaatttgcatcccattaaattctttctaattttggttgctctg-ttatttatttatttgtttttcgtctgcagAGGATGAGCATGATGTTGTCTGGTTTTGGCTGGAGAAAGGCAAGTCACATGAATGCCCTGTGTGCTCACAGTATTTCACG
                 |  |   ||  |   ||   |   | ||  |   | |   ||  | |  | || | ||  |  |  ||    || | ||  | |     | |||     |  ||     |    |||    || ||    | | ||||||| ||||||||||| || ||||||||| |||||||||||||| |||||||||||||||| ||| | ||||||||| ||
gtatagtacctgtgcatgctaatttccttgtttttgacctataaagaagcttctaggatgaaatcttctcctgcatcttctctataaatattc-atcgactaaccaccaatggaattaacttaaactgcaaattgcaatgattgatattttcagAGGACGAGCATGATGTCGTGTGGTTTTGGTTGGAGAAAGGCAAGCCACATGAATGCCCTGTCTGCACTCAGTATTTCTCG

upper sequence: Vv09s0002g06000.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA07G03680.4 (Glycine max), 3'ss of exon 4
gtaagcctctgtcacttactctctttaattattattttcc-atttatttatttcttacaattaattaatttgcatcccattaaattctttctaattttggttgctctgttatttatttatttgtttttcgtctgcagAGGATGAGCATGATGTTGTCTGGTTTTGGCTGGAGAAAGGCAAGTCACATGAATGCCCTGTGTGCTCACAGTATTTCACG--------------------
|| ||  || |    || ||   ||   ||| | | |||     | |  | ||||| | |  |  | ||  | |      || | |  |  | ||  || ||  |  |    | |   | |||||||  |  | |||||||||||||||||||||||||||||||||||||||||| |||| | |||||||| || |||||| ||||||||||                        
gtgagtatcagaatattccttgtttctcttaatgtcttcttgcatgtgaacttcttccca--aggtgat--gaaaaaagctagaattctggttatggtgttta-tgagggggtgaacaacttgtttt--gattacagAGGATGAGCATGATGTTGTCTGGTTTTGGCTGGAGAAAGACAAGCCCCATGAATGTCCAGTGTGCGCACAGTATTTTGTTGTAAGTTCATAATGACTTTT

upper sequence: Vv09s0002g06000.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA07G03680.1 (Glycine max), 3'ss of exon 4
gtaagcctctgtcacttactctctttaattattattttcc-atttatttatttcttacaattaattaatttgcatcccattaaattctttctaattttggttgctctgttatttatttatttgtttttcgtctgcagAGGATGAGCATGATGTTGTCTGGTTTTGGCTGGAGAAAGGCAAGTCACATGAATGCCCTGTGTGCTCACAGTATTTCACG
|| ||  || |    || ||   ||   ||| | | |||     | |  | ||||| | |  |  | ||  | |      || | |  |  | ||  || ||  |  |    | |   | |||||||  |  | |||||||||||||||||||||||||||||||||||||||||| |||| | |||||||| || |||||| ||||||||||    
gtgagtatcagaatattccttgtttctcttaatgtcttcttgcatgtgaacttcttccca--aggtgat--gaaaaaagctagaattctggttatggtgttta-tgagggggtgaacaacttgtttt--gattacagAGGATGAGCATGATGTTGTCTGGTTTTGGCTGGAGAAAGACAAGCCCCATGAATGTCCAGTGTGCGCACAGTATTTTGTT

upper sequence: Vv09s0002g06000.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA15G01360.1 (Glycine max), 3'ss of exon 4
gtaagcctctgtcacttactctctttaattattattttccatttatttatttct-tacaattaattaatttgcatcccattaaattctttctaattttggttgctctgttatttatttatttgtttttcgtctgcagAGGATGAGCATGATGTTGTCTGGTTTTGGCTGGAGAAAGGCAAGTCACATGAATGCCCTGTGTGCTCACAGTATTTCACG
                     |   |  |  || | || | ||||   || | | | |||    ||  | |  |||  || |||  |     || || | ||    |||   |  || |       ||  |||||||| |||||||||||||||||||||||||||||||||||||||||| |  | ||||| || ||||||||||||||||| | |
--------------------gtaagtgttccttgtctttc-tttacgaatctgtgtgcaagccttt--tcttaatctgatgaaaaacaccagaagtt-gattatattgtg--tggttaaaaccccctttttctgcagAAGATGAGCATGATGTTGTCTGGTTTTGGCTGGAGAAAGGCAAGCCTAAAGAATGTCCAGTGTGCTCACAGTATTTTAAG

upper sequence: Vv09s0002g06000.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA07G03680.3 (Glycine max), 3'ss of exon 4
gtaagcctctgtcacttactctctttaattattattttccatttatttatttcttacaattaattaatttgcatcccattaaattctttctaattttggttgctctgttatttatttatttgtttttcgtctgcagAGGATGAGCATGATGTTGTCTGGTTTTGGCTGGAGAAAGGCAAGTCACATGAATGCCCTGTGTGCTCACAGTATTTCACG
|||      | |  |||  |    |||||  |  | || ||| |    | ||||| | |  |  | ||  | |      || | |  |  | ||  || ||  |  |    | |   | |||||||  |  | |||||||||||||||||||||||||||||||||||||||||| |||| | |||||||| || |||||| ||||||||||    
gtatcagaatattccttgtttctcttaat-gtcttcttgcatgtga--acttcttccca--aggtgat--gaaaaaagctagaattctggttatggtgttta-tgagggggtgaacaacttgtttt--gattacagagGATGAGCATGATGTTGTCTGGTTTTGGCTGGAGAAAGACAAGCCCCATGAATGTCCAGTGTGCGCACAGTATTTTGTT

upper sequence: Vv09s0002g06000.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA07G03680.2 (Glycine max), 3'ss of exon 4
---gtaagcctctgtcacttactctctttaattattattttcc-atttatttatttcttacaattaattaatttgcatcccattaaattctttctaattttggttgctctgttatttatttatttgtttttcgtctgcagAGGATGAGCATGATGTTGTCTGGTTTTGGCTGGAGAAAGGCAAGTCACATGAATGCCCTGTGTGCTCACAGTATTTCACG
   || ||  || |    || ||   ||   ||| | | |||     | |  | ||||| | |  |  | ||  | |      || | |  |  | ||  || ||  |  |    | |   | |||||||  |  | |||||||||||||||||||||||||||||||||||||||||| |||| | |||||||| || |||||| ||||||||||    
gtggtgagtatcagaatattccttgtttctcttaatgtcttcttgcatgtgaacttcttccca--aggtgat--gaaaaaagctagaattctggttatggtgttta-tgagggggtgaacaacttgtttt--gattacagAGGATGAGCATGATGTTGTCTGGTTTTGGCTGGAGAAAGACAAGCCCCATGAATGTCCAGTGTGCGCACAGTATTTTGTT

upper sequence: Vv09s0002g06000.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA08G22410.1 (Glycine max), 3'ss of exon 4
gtaagcctctgtcacttactctctttaattattattttccatttatttatttcttacaattaattaatttgcatcccattaaattctttctaattttggttgctctgttatttatttatttgtttttcgtctgcagAGGATGAGCATGATGTTGTCTGGTTTTGGCTGGAGAAAGGCAAGTCACATGAATGCCCTGTGTGCTCACAGTATTTCACG
|| ||   | |    || ||   ||   ||| | | |||  |  || |     |          | ||    |   | |  |||||||  | ||  || ||  |  |    | |   | |||||||  |  | |||||||||||||||||||||||||||||||||||||||||| |||| | || ||||| || |||||| ||||||||||    
gtgagtaccagaatattccttgtttctcttaatgtcttct-tgcatgtgaccttcttcccagggtgatgaaaaaggc-tagaattcttggttatggtgttta-tgagggggtgaacgacttgtttt--gatttcagAGGATGAGCATGATGTTGTCTGGTTTTGGCTGGAGAAAGACAAGCCCCACGAATGTCCAGTGTGCGCACAGTATTTTGTT

upper sequence: Vv09s0002g06000.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA13G43980.1 (Glycine max), 3'ss of exon 3
gtaagcctctgtcacttactctctttaattattattttccatttatttatttct-tacaattaattaatttgcatcccattaaattctttctaattttggttgctctgttatttatttatttgtttttcgtctgcagAGGATGAGCATGATGTTGTCTGGTTTTGGCTGGAGAAAGGCAAGTCACATGAATGCCCTGTGTGCTCACAGTATTTCACG
                        ||  || |  || |  ||||||  || | | | ||||   ||  | |  |||  || |||   |  |  |  ||| ||    |||    |    |     ||||  |||||||| | |||||||||||||||||||||||||||||||||||||||| |    |||||||| ||||||||||||||||| | |
-----------------gtaagtgttccttgtctttctttatttatgaatctgtgtgcaatccttt--tcttaatctgatgaaaaa-taccagaagttgattatattgtgtggtgaaaaccccctttt--tctgcagAAGGTGAGCATGATGTTGTCTGGTTTTGGCTGGAGAAAGGCAAGCCTATAGAATGCCCAGTGTGCTCACAGTATTTTAAG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32457569|gb|CD798743.1|CD798743
EST:     TCAGTCTTACTATGATAAAAGAATAGTTGGGTGCCCTGGAGGTGAAGGAG                         AGGATGAGCATGATGTTGTCTGGTTTTGGCTGGAGAAAGGCAAGTCACATG
genomic: TCAGTCTTACTATGATAAAAGAATAGTTGGGTGCCCTGGAGGTGAAGGAGgtaagcctct ... tcgtctgcagAGGATGAGCATGATGTTGTCTGGTTTTGGCTGGAGAAAGGCAAGTCACATG
EST: gi|110383499|gb|EC947874.1|EC947874
EST:     TCAGTCTTACTATGATAAAAGAATAGTTGGGTGCCCTGGAGGTGAAGGAG                         AGGATGAGCATGATGTTGTCTGGTTTTGGCTGGAGAAAGGCAAGTCACATG
genomic: TCAGTCTTACTATGATAAAAGAATAGTTGGGTGCCCTGGAGGTGAAGGAGgtaagcctct ... tcgtctgcagAGGATGAGCATGATGTTGTCTGGTTTTGGCTGGAGAAAGGCAAGTCACATG
EST: gi|71869211|gb|DT018266.1|DT018266
EST:     TCAGTCTTACTATGATAAAAGAATAGTTGGGTGCCCTGGAGGTGAAGGAG                         AGGATGAGCATGATGTTGTCTGGTTTTGGCTGGAGAAAGGCAAGTCACATG
genomic: TCAGTCTTACTATGATAAAAGAATAGTTGGGTGCCCTGGAGGTGAAGGAGgtaagcctct ... tcgtctgcagAGGATGAGCATGATGTTGTCTGGTTTTGGCTGGAGAAAGGCAAGTCACATG
EST: gi|37184968|gb|CF604321.1|CF604321
EST:     TCAGTCTTACTATGATAAAAGAATAGTTGGGTGCCCTGGAGGTGAAGGAG                         AGGATGAGCATGATGTTGTCTGGTTTT
genomic: TCAGTCTTACTATGATAAAAGAATAGTTGGGTGCCCTGGAGGTGAAGGAGgtaagcctct ... tcgtctgcagAGGATGAGCATGATGTTGTCTGGTTTT
EST: gi|110710069|gb|EE086082.1|EE086082
EST:     TCAGTCTTACTATGATAAAAGAATAGTTGGGTGCCCTGGAGGTGAAGGAG                         AGGATGAGCATGATGTTGTCTGGTTTTGGCTGGANAAAGGCAAGTCACATG
genomic: TCAGTCTTACTATGATAAAAGAATAGTTGGGTGCCCTGGAGGTGAAGGAGgtaagcctct ... tcgtctgcagAGGATGAGCATGATGTTGTCTGGTTTTGGCTGGAGAAAGGCAAGTCACATG
EST: gi|110416472|gb|EC982456.1|EC982456
EST:     TCAGTCTTACTATGATAAAAGAATAGTTGGGTGCCCTGGAGGTGAAGGAG                         AGGATGAGCATGATGTTGTCTGGTTTTGGCTGGAGAAAGGCAAGTCACATG
genomic: TCAGTCTTACTATGATAAAAGAATAGTTGGGTGCCCTGGAGGTGAAGGAGgtaagcctct ... tcgtctgcagAGGATGAGCATGATGTTGTCTGGTTTTGGCTGGAGAAAGGCAAGTCACATG
EST: gi|110372596|gb|EC936778.1|EC936778
EST:     TCAGTCTTACTATGATAAAAGAATAGTTGGGTGCCCTGGAGGTGAAGGAG                         AGGATGAGCATGATGTTGTCTGGTTTTGGCTGGAGAAAGGCAAGTCACATG
genomic: TCAGTCTTACTATGATAAAAGAATAGTTGGGTGCCCTGGAGGTGAAGGAGgtaagcctct ... tcgtctgcagAGGATGAGCATGATGTTGTCTGGTTTTGGCTGGAGAAAGGCAAGTCACATG
EST: gi|77583916|gb|DV220998.1|DV220998
EST:     TCAGTCTTACTATGATAAAAGAATAGTTGGGTGCCCTGGAGGTGAAGGAG                         AGGATGAGCATGATGTTGTCTGGTTTTGGCTGGAGAAAGGCAAGTCACATG
genomic: TCAGTCTTACTATGATAAAAGAATAGTTGGGTGCCCTGGAGGTGAAGGAGgtaagcctct ... tcgtctgcagAGGATGAGCATGATGTTGTCTGGTTTTGGCTGGAGAAAGGCAAGTCACATG
EST: gi|110729376|gb|EE105272.1|EE105272
EST:     TCAGTCTTACTATGATAAAAGAATAGTTGGGTGCCCTGGAGGTGAAGGAG                         AGGATGAGCATGATGTTGTCTGGTTTTGGCTGGAGAAAGGCAAGTCACATG
genomic: TCAGTCTTACTATGATAAAAGAATAGTTGGGTGCCCTGGAGGTGAAGGAGgtaagcctct ... tcgtctgcagAGGATGAGCATGATGTTGTCTGGTTTTGGCTGGAGAAAGGCAAGTCACATG
EST: gi|30130611|gb|CB915950.1|CB915950
EST:     TCAGTCTTACTATGATAAAAGAATAGTTGGGTGCCCTGGAGGTGAAGGAG                         AGGATGAGCATGATGTTGTCTGGTTTTGGCTGGAGAAAGGCAAGTCACATG
genomic: TCAGTCTTACTATGATAAAAGAATAGTTGGGTGCCCTGGAGGTGAAGGAGgtaagcctct ... tcgtctgcagAGGATGAGCATGATGTTGTCTGGTTTTGGCTGGAGAAAGGCAAGTCACATG
EST: gi|110409652|gb|EC975320.1|EC975320
EST:     TCAGTCTTACTATGATAAAAGAATAGTTGGGTGCCCTGGAGGTGAAGGAG                         AGGATGAGCATGATGTTGTCTGGTTTTGGCTGGAGAAAGGCAAGTCACATG
genomic: TCAGTCTTACTATGATAAAAGAATAGTTGGGTGCCCTGGAGGTGAAGGAGgtaagcctct ... tcgtctgcagAGGATGAGCATGATGTTGTCTGGTTTTGGCTGGAGAAAGGCAAGTCACATG
EST: gi|110391356|gb|EC956324.1|EC956324
EST:     TCAGTCTTACTATGATAAAAGAATAGTTGGGTGCCCTGGAGGTGAAGGAG                         AGGATGAGCATGATGTTGTTTGGTTTTGGCTGGAGAAAGGCAAGTCACATG
genomic: TCAGTCTTACTATGATAAAAGAATAGTTGGGTGCCCTGGAGGTGAAGGAGgtaagcctct ... tcgtctgcagAGGATGAGCATGATGTTGTCTGGTTTTGGCTGGAGAAAGGCAAGTCACATG
EST: gi|110702032|gb|EE080284.1|EE080284
EST:     TCAGTCTTACTATGATAAAAGAATAGTTGGGTGCCCTGGAGGTGAAGGAG                         AGGATGAGCATGATGTTGTCTGGTTTTGGCTGGAGAAAGGCAAGTCACATG
genomic: TCAGTCTTACTATGATAAAAGAATAGTTGGGTGCCCTGGAGGTGAAGGAGgtaagcctct ... tcgtctgcagAGGATGAGCATGATGTTGTCTGGTTTTGGCTGGAGAAAGGCAAGTCACATG
EST: gi|110732279|gb|EE107427.1|EE107427
EST:     TCAGTCTTACTATGATAAAAGAATAGTTGGGTGCCCTGGAGGTGAAGGAG                         AGGATGAGCATGATGTTGTCTGGTTTTGGCTGGAGAAAGGCAAGTCACATG
genomic: TCAGTCTTACTATGATAAAAGAATAGTTGGGTGCCCTGGAGGTGAAGGAGgtaagcctct ... tcgtctgcagAGGATGAGCATGATGTTGTCTGGTTTTGGCTGGAGAAAGGCAAGTCACATG
EST: gi|110363963|gb|EC927598.1|EC927598
EST:     TCAGTCTTACTATGATAAAAGAATAGTTGGGTGCCCTGGAGGTGAAGGAG                         AGGATGAGCATGATGTTGTCTGGTTTTGGCTGGAGAAAGGCAAGTCACATG
genomic: TCAGTCTTACTATGATAAAAGAATAGTTGGGTGCCCTGGAGGTGAAGGAGgtaagcctct ... tcgtctgcagAGGATGAGCATGATGTTGTCTGGTTTTGGCTGGAGAAAGGCAAGTCACATG
EST: gi|34363406|gb|CF404991.1|CF404991
EST:     TCAGTCTTACTATGATAAAAGAATAGTTGGGTGCCCTGGAGGTGAAGGAG                         AGGATGAGCATGATGTTGTCTGGTTTTGGCTGGAGAAAGGCAAGTCACATG
genomic: TCAGTCTTACTATGATAAAAGAATAGTTGGGTGCCCTGGAGGTGAAGGAGgtaagcctct ... tcgtctgcagAGGATGAGCATGATGTTGTCTGGTTTTGGCTGGAGAAAGGCAAGTCACATG
EST: gi|110388157|gb|EC952876.1|EC952876
EST:     TCAGTCTTACTATGATAAAAGAATAGTTGGGTGCCCTGGAGGTGAAGGAG                         AGGATGAGCATGATGTTGTCTGGTTTTGGCTGGAGAAAGGCAAGTCACATG
genomic: TCAGTCTTACTATGATAAAAGAATAGTTGGGTGCCCTGGAGGTGAAGGAGgtaagcctct ... tcgtctgcagAGGATGAGCATGATGTTGTCTGGTTTTGGCTGGAGAAAGGCAAGTCACATG
EST: gi|22015288|gb|BQ800322.1|BQ800322
EST:     TCAGTCTTACTATGATAAAAGAATAGTTGGGTGCCCTGGAGGTGAAGGAG                         AGGATGAGCATGATGTTGTCTGGTTTTGGCTGGAGAAAGGCAAGTCACATG
genomic: TCAGTCTTACTATGATAAAAGAATAGTTGGGTGCCCTGGAGGTGAAGGAGgtaagcctct ... tcgtctgcagAGGATGAGCATGATGTTGTCTGGTTTTGGCTGGAGAAAGGCAAGTCACATG
EST: gi|110379671|gb|EC944884.1|EC944884
EST:     TCAGTCTTACTATGATAAAAGAATAGTTGGGTGCCCTGGAGGTGAAGGAG                         AGGATGAGCATGATGTTGTCTGGTTTTGGCTGGAGAAAGGCAAGTCACATG
genomic: TCAGTCTTACTATGATAAAAGAATAGTTGGGTGCCCTGGAGGTGAAGGAGgtaagcctct ... tcgtctgcagAGGATGAGCATGATGTTGTCTGGTTTTGGCTGGAGAAAGGCAAGTCACATG
EST: gi|351023328|gb|FQ432711.1|FQ432711
EST:     TCAGTCTTACTATGATAAAAGAATAGTTGGGTGCCCTGGAGGTGAAGGAG                         AGGATGAGCATGATGTTGTCTGGTTTTGGCTGGAGAAAGGCAAGTCACATG
genomic: TCAGTCTTACTATGATAAAAGAATAGTTGGGTGCCCTGGAGGTGAAGGAGgtaagcctct ... tcgtctgcagAGGATGAGCATGATGTTGTCTGGTTTTGGCTGGAGAAAGGCAAGTCACATG
EST: gi|110358977|gb|EC919699.1|EC919699
EST:     TCAGTCTTACTATGATAAAAGAATAGTTGGGTGCCCTGGAGGTGAAGGAG                         AGGATGAGCATGATGTTGTCTGGTTTTGGCTGGAGAAAGGCAAGTCACATG
genomic: TCAGTCTTACTATGATAAAAGAATAGTTGGGTGCCCTGGAGGTGAAGGAGgtaagcctct ... tcgtctgcagAGGATGAGCATGATGTTGTCTGGTTTTGGCTGGAGAAAGGCAAGTCACATG
EST: gi|34416754|gb|CF415508.1|CF415508
EST:     TCAGTCTTACTATGATAAAAGAATAGTTGGGTGCCCTGGAGGTGAAGGAG                         AGGATGAGCATGATGTTGTCTGGTTTTGGCTGGAGAAAGGCAAGTCACATG
genomic: TCAGTCTTACTATGATAAAAGAATAGTTGGGTGCCCTGGAGGTGAAGGAGgtaagcctct ... tcgtctgcagAGGATGAGCATGATGTTGTCTGGTTTTGGCTGGAGAAAGGCAAGTCACATG
EST: gi|110388522|gb|EC953282.1|EC953282
EST:     TCAGTCTTACTATGATAAAAGAATAGTTGGGTGCCCTGGAGGTGAAGGAG                         AGGATGAGCATGATGTTGTCTGGTTTTGGCTGGAGAAAGGCAAGTCACATG
genomic: TCAGTCTTACTATGATAAAAGAATAGTTGGGTGCCCTGGAGGTGAAGGAGgtaagcctct ... tcgtctgcagAGGATGAGCATGATGTTGTCTGGTTTTGGCTGGAGAAAGGCAAGTCACATG
EST: gi|18458128|gb|BM436406.1|BM436406
EST:     TCAGTCTTACTATGATAAAAGAATAGTTGGGTGCCCTGGAGGTGAAGGAG                         AGGATGAGCATGATGTTGTCTGGTTTTGGCTGGAGAAAGGCAAGTCACATG
genomic: TCAGTCTTACTATGATAAAAGAATAGTTGGGTGCCCTGGAGGTGAAGGAGgtaagcctct ... tcgtctgcagAGGATGAGCATGATGTTGTCTGGTTTTGGCTGGAGAAAGGCAAGTCACATG
EST: gi|110688079|gb|EE066223.1|EE066223
EST:     TCAGTCTTACTATGATAAAAGAATAGTTGGGTGCCCTGGAGGTGAAGGAG                         AGGATGAGCATGATGTTGTCTGGTTTTGGCTGGAGAAAGGCAAGTCACATG
genomic: TCAGTCTTACTATGATAAAAGAATAGTTGGGTGCCCTGGAGGTGAAGGAGgtaagcctct ... tcgtctgcagAGGATGAGCATGATGTTGTCTGGTTTTGGCTGGAGAAAGGCAAGTCACATG
EST: gi|71890751|gb|DT039806.1|DT039806
EST:     TCAGTCTTACTATGATAAAAGAATAGTTGGGTGCCCTGGAGGTGAAGGAG                         AGGATGAGCATGATGTTGTCTGGTTTTGGCTGGAGAAAGGCAAGTCACATG
genomic: TCAGTCTTACTATGATAAAAGAATAGTTGGGTGCCCTGGAGGTGAAGGAGgtaagcctct ... tcgtctgcagAGGATGAGCATGATGTTGTCTGGTTTTGGCTGGAGAAAGGCAAGTCACATG
EST: gi|110720795|gb|EE097031.1|EE097031
EST:     TCAGTCTTACTATGATAAAAGAATAGTTGGGTGCCCTGGAGGTGAAGGAG                         AGGATGAGCATGATGTTGTCTGGTTTTGGCTGGAGAAAGGCAAGTCACATG
genomic: TCAGTCTTACTATGATAAAAGAATAGTTGGGTGCCCTGGAGGTGAAGGAGgtaagcctct ... tcgtctgcagAGGATGAGCATGATGTTGTCTGGTTTTGGCTGGAGAAAGGCAAGTCACATG
EST: gi|110686825|gb|EE064905.1|EE064905
EST:     TCAGTCTTACTATGATAAAAGAATAGTTGGGTGCCCTGGAGGTGAAGGAG                         AGGATGAGCATGATGTTGTCTGGTTTTGGCTGGAGAAAGGCAAGTCACATG
genomic: TCAGTCTTACTATGATAAAAGAATAGTTGGGTGCCCTGGAGGTGAAGGAGgtaagcctct ... tcgtctgcagAGGATGAGCATGATGTTGTCTGGTTTTGGCTGGAGAAAGGCAAGTCACATG
EST: gi|110699246|gb|EE076077.1|EE076077
EST:     TCAGTCTTACTATGATAAAAGAATAGTTGGGTGCCCTGGAGGTGAACGAG                         AGGATGAGCATGATGTTGTCTGGTTTTGGCTGGAGAAAGGCAAGTCACATG
genomic: TCAGTCTTACTATGATAAAAGAATAGTTGGGTGCCCTGGAGGTGAAGGAGgtaagcctct ... tcgtctgcagAGGATGAGCATGATGTTGTCTGGTTTTGGCTGGAGAAAGGCAAGTCACATG
EST: gi|22011533|gb|BQ796567.1|BQ796567
EST:     TCAGTCTTACTATGATAAAAGAATAGTTGGGTGCCCTGGAGGTGAAGGAG                         AGGATGAGCATGATGTTGTCTGGTTTTGGCTGGAGAAAGGCAAGTCACATG
genomic: TCAGTCTTACTATGATAAAAGAATAGTTGGGTGCCCTGGAGGTGAAGGAGgtaagcctct ... tcgtctgcagAGGATGAGCATGATGTTGTCTGGTTTTGGCTGGAGAAAGGCAAGTCACATG
EST: gi|351021701|gb|FQ437086.1|FQ437086
EST:     TCAGTCTTACTATGATAAAAGAATAGTTGGGTGCCCTGGAGGTGAAGGAG                         AGGATGAGCATGATGTTGTCTGGTTTTGGCTGGAGAAAGGCAAGTCACATG
genomic: TCAGTCTTACTATGATAAAAGAATAGTTGGGTGCCCTGGAGGTGAAGGAGgtaagcctct ... tcgtctgcagAGGATGAGCATGATGTTGTCTGGTTTTGGCTGGAGAAAGGCAAGTCACATG
EST: gi|110726657|gb|EE102629.1|EE102629
EST:     TCAGTCTTACTATGATAAAAGAATAGTTGGGTGCCCTGGAGGTGAANGAG                         AGGATGAGCATGATGTTGTCTGGTTTTGGCTGGAGAAAGGCAAGTCACATG
genomic: TCAGTCTTACTATGATAAAAGAATAGTTGGGTGCCCTGGAGGTGAAGGAGgtaagcctct ... tcgtctgcagAGGATGAGCATGATGTTGTCTGGTTTTGGCTGGAGAAAGGCAAGTCACATG
EST: gi|22011530|gb|BQ796564.1|BQ796564
EST:     TCAGTCTTACTATGATAAAAGAATAGTTGGGTGCCCTGGAGGTGAAGGAG                         AGGATGAGCATGATGTTGTCTGGTTTTGGCTGGAGAAAGGCAAGTCACATG
genomic: TCAGTCTTACTATGATAAAAGAATAGTTGGGTGCCCTGGAGGTGAAGGAGgtaagcctct ... tcgtctgcagAGGATGAGCATGATGTTGTCTGGTTTTGGCTGGAGAAAGGCAAGTCACATG
EST: gi|110697767|gb|EE075131.1|EE075131
EST:     TCAGTCTTACTATGATAAAAGAATAGTTGGGTGCCCTGGAGGTGAAGGAG                         AGGATGAGCATGATGTTGTCTGGTTTTGGCTGGAGAAAGGCAAGTCACATG
genomic: TCAGTCTTACTATGATAAAAGAATAGTTGGGTGCCCTGGAGGTGAAGGAGgtaagcctct ... tcgtctgcagAGGATGAGCATGATGTTGTCTGGTTTTGGCTGGAGAAAGGCAAGTCACATG
EST: gi|110419881|gb|EC986135.1|EC986135
EST:     TCAGTCTTACTATGATAAAAGAATAGTTGGGTGCCCTGGAGGTGAAGGAG                         AGGATGAGCATGATGTTGTCTGGTTTTGGCTGGAGAAAGGCAAGTCACATG
genomic: TCAGTCTTACTATGATAAAAGAATAGTTGGGTGCCCTGGAGGTGAAGGAGgtaagcctct ... tcgtctgcagAGGATGAGCATGATGTTGTCTGGTTTTGGCTGGAGAAAGGCAAGTCACATG
EST: gi|110689245|gb|EE065301.1|EE065301
EST:     TCAGTCTTACTATGATAAAAGAATAGTTGGGTGCCCTGGAGGTGAAGGAG                         AGGATGAGCATGATGTTGTCTGGTTTTGGCTGGAGAAAGGCAAGTCACATG
genomic: TCAGTCTTACTATGATAAAAGAATAGTTGGGTGCCCTGGAGGTGAAGGAGgtaagcctct ... tcgtctgcagAGGATGAGCATGATGTTGTCTGGTTTTGGCTGGAGAAAGGCAAGTCACATG
EST: gi|110383239|gb|EC947598.1|EC947598
EST:     TCAGTCTTACTATGATAAAAGAATAGTTGGGTGCCCTGGAGGTGAAGGAG                         AGGATGAGCATGATGTTGTCTGGTTTTGGCTGGAGAAAGGCAAGTCACATG
genomic: TCAGTCTTACTATGATAAAAGAATAGTTGGGTGCCCTGGAGGTGAAGGAGgtaagcctct ... tcgtctgcagAGGATGAGCATGATGTTGTCTGGTTTTGGCTGGAGAAAGGCAAGTCACATG
EST: gi|351028470|gb|FQ444751.1|FQ444751
EST:     TCAGTCTTACTATGATAAAAGAATAGTTGGGTGCCCTGGAGGTGAAGGAG                         AGGATGAGCATGATGTTGTCTGGTTTTGGCTGGAGAAAGGCAAGTCACATG
genomic: TCAGTCTTACTATGATAAAAGAATAGTTGGGTGCCCTGGAGGTGAAGGAGgtaagcctct ... tcgtctgcagAGGATGAGCATGATGTTGTCTGGTTTTGGCTGGAGAAAGGCAAGTCACATG
EST: gi|110383358|gb|EC947726.1|EC947726
EST:     TCAGTCTTACTATGATAAAAGAATAGTTGGGTGCCCTGGAGGTGAAGGAG                         AGGATGAGCATGATGTTGTCTGGTTTTGGCTGGAGAAAGGCAAGTCACATG
genomic: TCAGTCTTACTATGATAAAAGAATAGTTGGGTGCCCTGGAGGTGAAGGAGgtaagcctct ... tcgtctgcagAGGATGAGCATGATGTTGTCTGGTTTTGGCTGGAGAAAGGCAAGTCACATG
EST: gi|37189375|gb|CF608724.1|CF608724
EST:     TCAGTCTTACTATGATAAAAGAATAGTTGGGTGCCCTGGAGGTGAAGGAG                         AGGATGAGCATGATGTTGTCTGGTTTTGGCTGGAGAAAGGCAAGTC
genomic: TCAGTCTTACTATGATAAAAGAATAGTTGGGTGCCCTGGAGGTGAAGGAGgtaagcctct ... tcgtctgcagAGGATGAGCATGATGTTGTCTGGTTTTGGCTGGAGAAAGGCAAGTC
EST: gi|351015867|gb|FQ431822.1|FQ431822
EST:     TCAGTCTTACTATGATAAAAGAATAGTTGGGTGCCCTGGAGGTGAAGGAG                         AGGATGAGCATGATGTTGTCTGGTTTTGGCTGGAGAAAGGCAAGTCACATG
genomic: TCAGTCTTACTATGATAAAAGAATAGTTGGGTGCCCTGGAGGTGAAGGAGgtaagcctct ... tcgtctgcagAGGATGAGCATGATGTTGTCTGGTTTTGGCTGGAGAAAGGCAAGTCACATG
EST: gi|110705917|gb|EE083315.1|EE083315
EST:     TCAGTCTTACTATGATAAAAGAATAGTTGGGTGCCCTGGAGGTGAAGGAG                         AGGATGAGCATGATGTTGTCTGGTTTTGGCTGGAGAAAGGCAAGTCACATG
genomic: TCAGTCTTACTATGATAAAAGAATAGTTGGGTGCCCTGGAGGTGAAGGAGgtaagcctct ... tcgtctgcagAGGATGAGCATGATGTTGTCTGGTTTTGGCTGGAGAAAGGCAAGTCACATG
EST: gi|110704719|gb|EE081713.1|EE081713
EST:     TCAGTCTTACTATGATAAAAGAATAGTTGGGTGCCCTGGAGGTGAAGGAG                         AGGATGAGCATGATGTTGTCTGGTTTTGGCTGGAGAAAGGCAAGTCACATG
genomic: TCAGTCTTACTATGATAAAAGAATAGTTGGGTGCCCTGGAGGTGAAGGAGgtaagcctct ... tcgtctgcagAGGATGAGCATGATGTTGTCTGGTTTTGGCTGGAGAAAGGCAAGTCACATG
EST: gi|110417183|gb|EC983218.1|EC983218
EST:     TCAGTCTTACTATGATAAAAGAATAGTTGGGTGCCCTGGAGGTGAAGGAG                         AGGATGAGCATGATGTTGTCTGGTTTTGGCTGGAGAAAGGCAAGTCACATG
genomic: TCAGTCTTACTATGATAAAAGAATAGTTGGGTGCCCTGGAGGTGAAGGAGgtaagcctct ... tcgtctgcagAGGATGAGCATGATGTTGTCTGGTTTTGGCTGGAGAAAGGCAAGTCACATG
EST: gi|46919594|gb|CN548923.1|CN548923
EST:     TCAGTCTTACTATGATAAAAGAATAGTTGGGTGCCCTGGAGGTGAAGGAG                         AGGATGAGCATGATGTTGTCTGGTTTTGGCTGGAGAAAGGCAAGTCACATG
genomic: TCAGTCTTACTATGATAAAAGAATAGTTGGGTGCCCTGGAGGTGAAGGAGgtaagcctct ... tcgtctgcagAGGATGAGCATGATGTTGTCTGGTTTTGGCTGGAGAAAGGCAAGTCACATG
EST: gi|110687315|gb|EE064616.1|EE064616
EST:     TCAGTCTTACTATGATAAAAGAATAGTTGGGTGCCCTGGAGGTGAAGGAG                         AGGATGAGCATGATGTTGTCTGGTTTTGGCTGGAGAAAGGCAAGTCACATG
genomic: TCAGTCTTACTATGATAAAAGAATAGTTGGGTGCCCTGGAGGTGAAGGAGgtaagcctct ... tcgtctgcagAGGATGAGCATGATGTTGTCTGGTTTTGGCTGGAGAAAGGCAAGTCACATG
EST: gi|110715813|gb|EE094294.1|EE094294
EST:     TCAGTCTTACTATGATAAAAGAATAGTTGGGTGCCCTGGAGGTGAAGGAG                         AGGATGAGCATGATGTTGTCTGGTTTTGGCTGGAGAAAGGCAAGTCACATG
genomic: TCAGTCTTACTATGATAAAAGAATAGTTGGGTGCCCTGGAGGTGAAGGAGgtaagcctct ... tcgtctgcagAGGATGAGCATGATGTTGTCTGGTTTTGGCTGGAGAAAGGCAAGTCACATG
EST: gi|71890518|gb|DT039573.1|DT039573
EST:     TCAGTCTTACTATGATAAAAGAATAGTTGGGTGCCCTGGAGGTGAAGGAG                         AGGATGAGCATGATGTTGTCTGGTTTTGGCTGGAGAAAGGCAAGTCACATG
genomic: TCAGTCTTACTATGATAAAAGAATAGTTGGGTGCCCTGGAGGTGAAGGAGgtaagcctct ... tcgtctgcagAGGATGAGCATGATGTTGTCTGGTTTTGGCTGGAGAAAGGCAAGTCACATG
EST: gi|110372495|gb|EC936667.1|EC936667
EST:     TCAGTCTTACTATGATAAAAGAATAGTTGGGTGCCCTGGAGGTGAAGGAG                         AGGATGAGCATGATGTTGTCTGGTTTTGGCTGGAGAAAGGCAAGTCACATG
genomic: TCAGTCTTACTATGATAAAAGAATAGTTGGGTGCCCTGGAGGTGAAGGAGgtaagcctct ... tcgtctgcagAGGATGAGCATGATGTTGTCTGGTTTTGGCTGGAGAAAGGCAAGTCACATG
EST: gi|37189413|gb|CF608762.1|CF608762
EST:     TCAGTCTTACTATGATAAAAGAATAGTTGGGTGCCCTGGAGGTGAAGGAG                         AGGATGAGCATGATGTTGTCTGGTTTTGGCTG
genomic: TCAGTCTTACTATGATAAAAGAATAGTTGGGTGCCCTGGAGGTGAAGGAGgtaagcctct ... tcgtctgcagAGGATGAGCATGATGTTGTCTGGTTTTGGCTG
EST: gi|110384407|gb|EC948841.1|EC948841
EST:     TCAGTCTTACTATGATAAAAGAATAGTTGGGTGCCCTGGAGGTGAAGGAG                         AGGATGAGCATGATGTTGTCTGGTTTTGGCTGGAGAAAGGCAAGTCACATG
genomic: TCAGTCTTACTATGATAAAAGAATAGTTGGGTGCCCTGGAGGTGAAGGAGgtaagcctct ... tcgtctgcagAGGATGAGCATGATGTTGTCTGGTTTTGGCTGGAGAAAGGCAAGTCACATG
EST: gi|22015168|gb|BQ800202.1|BQ800202
EST:     TCAGTCTTACTATGATAAAAGAATAGTTGGGTGCCCTGGAGGTGAAGGAG                         AGGATGAGCATGATGTTGTCTGGTTTTGGCTGGAGAAAGGCAAGTCACATG
genomic: TCAGTCTTACTATGATAAAAGAATAGTTGGGTGCCCTGGAGGTGAAGGAGgtaagcctct ... tcgtctgcagAGGATGAGCATGATGTTGTCTGGTTTTGGCTGGAGAAAGGCAAGTCACATG
EST: gi|110377523|gb|EC942592.1|EC942592
EST:     TCAGTCTTACTATGATAAAAGAATAGTTGGGTGCCCTGGAGGTGAAGGAG                         AGGATGAGCATGATGTTGTCTGGTTTTGGCTGGAGAAAGGCAAGTCACATG
genomic: TCAGTCTTACTATGATAAAAGAATAGTTGGGTGCCCTGGAGGTGAAGGAGgtaagcctct ... tcgtctgcagAGGATGAGCATGATGTTGTCTGGTTTTGGCTGGAGAAAGGCAAGTCACATG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aattctttctaattttggttgctctgttatttatttatttgtttttcgtctgcagAGGATGAGCATGATGTTGTCTGGTTTTGGCTGGAGAAAGGCAAGTCACATGAATGCCCTGTGTGCTCACAGTATTTCACG
      ttctaat  putative branch site (score: 2)
                                 tttatttgtttttc  putative PPT
                      tctgttatttatttat  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtaagcctctgtcacttactctctttaattattattttccatttatttatttcttacaattaattaatttgcatcccattaaattctttctaattttggttgctctgttatttatttatttgtttttcgtctgcagAGGATGAGCATGATGTTGTCTGGTTTTGGCTGGAGAAAGGCAAGTCACATGAATGCCCTGTGTGCTCACAGTATTTCACG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAGAA