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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtataggaactgtcattcttctattttcaatcttgggcacttgaaattttgcttgattttgatcttattcaaaactcctacagGGTTTGTGTGTGGACAGCTCTCATGCTGTTCCTTCTTGCAATATTCAATGCTTGTGATATCATCAATAGGTTTACAAGGATTGCAGGGGAACTTTTTGGC

Basic information

species Vitis vinifera
transcript Vv09s0002g05810.t01
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv09s0002g05810.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: LOC_Os01g08020.1 (Oryza sativa), 3'ss of exon 4
gtataggaactgtcattcttctattttcaatcttgggcacttgaaattttgcttgattttgatcttattcaaa-actcct-acagGGTTTGTGTGTGGACAGCTCTCATGCTGTTCCTTCTTGCAATATTCAATGCTTGTGATATCATCAATAGGTTTACAAGGATTGCAGGGGAACTTTTTGGC
   ||  |||||  ||     || | |||   || |    |   ||      || ||  |   || |||     |||  | ||||||| ||  | ||||| || |||||| |||| ||||| ||||| |||||||||| | || | || |  |||||||||||| ||||||| ||||||||||| 
--gtaacaactga-atctgaatactatca-cgttagcttttcagaaaaaaagttaatgctctcctgatttgcctactgttgacagGGTCTGCATCTGGACTGCGCTCATGTTGTTTCTTCTGGCAATGTTCAATGCTTCTAATGTTATTAGCAGGTTTACAAGGGTTGCAGGAGAACTTTTTGGG

upper sequence: Vv09s0002g05810.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GRMZM2G051753_T01 (Zea mays), 3'ss of exon 4
gtataggaactgtcattct-tctattttcaatcttgggcacttgaaattttgcttgattttgatcttattcaaaactcctacagGGTTTGTGTGTGGACAGCTCTCATGCTGTTCCTTCTTGCAATATTCAATGCTTGTGATATCATCAATAGGTTTACAAGGATTGCAGGGGAACTTTTTGGC
   ||   ||||  ||    |  ||||  |  | ||    |||  |  |   ||  | |||    ||  ||     || |  ||||| ||  | ||||| ||  ||||| |||| ||| | ||||  ||||||||||   |  | || |  || ||||||||||||||||| ||||||||||||
--gtaatgactgaaatagaatgcatttgaacccatgttagctttcagataaactgcactttacatttcctccctgttc-tgtagGGTCTGCATCTGGACTGCCATCATGTTGTTTCTTTTGGCAACGTTCAATGCTTCCAACGTTATTAGCAGATTTACAAGGATTGCAGGAGAACTTTTTGGC


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aatcttgggcacttgaaattttgcttgattttgatcttattcaaaactcctacagGGTTTGTGTGTGGACAGCTCTCATGCTGTTCCTTCTTGCAATATTCAATGCTTGTGATATCATCAATAGGTTTACAAGGATTGCAGGGGAACTTTTTGGC
                            ttttgat  putative branch site (score: 4)
                                              ctcctac  putative PPT
                           attttgatcttatt  TA-rich tract