1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...tccatcaagtgtgtgctcaaatcaattctgattctgaaacatggtctgtcgttggaaaaatggcctttggttgttaaataacttaatgattgacatgcagGTTGAGGTTCCAAAGAAAAAGGTGAAGAAAACAAATATTCCTGTATCAGAATTGGTTTATGGTACAATGGTGCCTGCAGATGTGCAAAAAGCTGTAGAAA
species | Vitis vinifera |
transcript | Vv09s0002g04680.t01 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GGGTTCCAGAATCAGGTGACAAGTCTGTGCAGATGGAAACAGATACAAAG GTTGAGGTTCCAAAGAAAAAGGTGAAGAAAACAAATATTCCTGTATCAGAAEST: gi|351033537|gb|FQ447696.1|FQ447696
genomic: GGGTTCCAGAATCAGGTGACAAGTCTGTGCAGATGGAAACAGATACAAAGgtcagtagta ... tgacatgcagGTTGAGGTTCCAAAGAAAAAGGTGAAGAAAACAAATATTCCTGTATCAGAA
EST: GGGTTCCAGAATCAGGTGACAAGTCTGTGCAGATGGAAACAGATACAAAG GTTGAGGTTCCAAAGAAAAAGGTGAAGAAAACAAATATTCCTGTATCAGAAEST: gi|349825219|gb|FQ417940.1|FQ417940
genomic: GGGTTCCAGAATCAGGTGACAAGTCTGTGCAGATGGAAACAGATACAAAGgtcagtagta ... tgacatgcagGTTGAGGTTCCAAAGAAAAAGGTGAAGAAAACAAATATTCCTGTATCAGAA
EST: GGGTTCCAGAATCAGGTGACAAGTCTGTGCAGATGGAAACAGATACAAAG GTTGAGGTTCCAAAGAAAAAGGTGAAGAAAACAAATATTCCTGTATCAGAAEST: gi|351026704|gb|FQ436357.1|FQ436357
genomic: GGGTTCCAGAATCAGGTGACAAGTCTGTGCAGATGGAAACAGATACAAAGgtcagtagta ... tgacatgcagGTTGAGGTTCCAAAGAAAAAGGTGAAGAAAACAAATATTCCTGTATCAGAA
EST: GGGTTCCAGAATCAGGTGACAAGTCTGTGCAGATGGAAACAGATACAAAG GTTGAGGTTCCAAAGAAAAAGGTGAAGAAAACAAATATTCCTGTATCAGAAEST: gi|71856570|gb|DT005625.1|DT005625
genomic: GGGTTCCAGAATCAGGTGACAAGTCTGTGCAGATGGAAACAGATACAAAGgtcagtagta ... tgacatgcagGTTGAGGTTCCAAAGAAAAAGGTGAAGAAAACAAATATTCCTGTATCAGAA
EST: GGGTTCCAGAATCAGGTGACAAGTCTGTGCAGATGGAAACAGATACAAAG GTTGAGGTTCCAAAGAAAAAGGTGAAGAAAACAAATATTCCTGTATCAGAAEST: gi|351056576|gb|FQ442404.1|FQ442404
genomic: GGGTTCCAGAATCAGGTGACAAGTCTGTGCAGATGGAAACAGATACAAAGgtcagtagta ... tgacatgcagGTTGAGGTTCCAAAGAAAAAGGTGAAGAAAACAAATATTCCTGTATCAGAA
EST: GGGTTCCAGAATCAGGTGACAAGTCTGTGCAGATGGAAACAGATACAAAG GTTGAGGTTCCAAAGAAAAAGGTGAAGAAAACAAATATTCCTGTATCAGAAEST: gi|71857129|gb|DT006184.1|DT006184
genomic: GGGTTCCAGAATCAGGTGACAAGTCTGTGCAGATGGAAACAGATACAAAGgtcagtagta ... tgacatgcagGTTGAGGTTCCAAAGAAAAAGGTGAAGAAAACAAATATTCCTGTATCAGAA
EST: GGGTTCCAGAATCAGGTGACAAGTCTGTGCAGATGGAAACAGATACAAAG GTTGAGGTTCCAAAGAAAAAGGTGAAGAAAACAAATATTCCTGTATCAGAAEST: gi|351021829|gb|FQ437214.1|FQ437214
genomic: GGGTTCCAGAATCAGGTGACAAGTCTGTGCAGATGGAAACAGATACAAAGgtcagtagta ... tgacatgcagGTTGAGGTTCCAAAGAAAAAGGTGAAGAAAACAAATATTCCTGTATCAGAA
EST: GGGTTCCAGAATCAGGTGACAAGTCTGTGCAGATGGAAACAGATACAAAG GTTGAGGTTCCAAAGAAAAAGGTGAAGAAAACAAATATTCCTGTATCAGAAEST: gi|351015172|gb|FQ445456.1|FQ445456
genomic: GGGTTCCAGAATCAGGTGACAAGTCTGTGCAGATGGAAACAGATACAAAGgtcagtagta ... tgacatgcagGTTGAGGTTCCAAAGAAAAAGGTGAAGAAAACAAATATTCCTGTATCAGAA
EST: GGGTTCCAGAATCAGGTGACAAGTCTGTGCAGATGGAAACAGATACAAAG GTTGAGGTTCCAAAGAAAAAGGTGAAGAAAACAAATATTCCTGTATCAGAAEST: gi|351016149|gb|FQ435469.1|FQ435469
genomic: GGGTTCCAGAATCAGGTGACAAGTCTGTGCAGATGGAAACAGATACAAAGgtcagtagta ... tgacatgcagGTTGAGGTTCCAAAGAAAAAGGTGAAGAAAACAAATATTCCTGTATCAGAA
EST: GGGTTCCAGAATCAGGTGACAAGTCTGTGCAGATGGAAACAGATACAAAG GTTGAGGTTCCAAAGAAAAAGGTGAAGAAAACAAATATTCCTGTATCAGAAEST: gi|351014027|gb|FQ434179.1|FQ434179
genomic: GGGTTCCAGAATCAGGTGACAAGTCTGTGCAGATGGAAACAGATACAAAGgtcagtagta ... tgacatgcagGTTGAGGTTCCAAAGAAAAAGGTGAAGAAAACAAATATTCCTGTATCAGAA
EST: GGGTTCCAGAATCAGGTGACAAGTCTGTGCAGATGGAAACAGATACAAAG GTTGAGGTTCCAAAGAAAAAGGTGAAGAAGACAAATATTCCTGTATCAGAAEST: gi|349830554|gb|FQ416852.1|FQ416852
genomic: GGGTTCCAGAATCAGGTGACAAGTCTGTGCAGATGGAAACAGATACAAAGgtcagtagta ... tgacatgcagGTTGAGGTTCCAAAGAAAAAGGTGAAGAAAACAAATATTCCTGTATCAGAA
EST: GGGTTCCAGAATCAGGTGACAAGTCTGTGCAGATGGAAACAGATACAAAG GTTGAGGTTCCAAAGAAAAAGGTGAAGAAAACAAATATTCCTGTATCAGAAEST: gi|351022620|gb|FQ447142.1|FQ447142
genomic: GGGTTCCAGAATCAGGTGACAAGTCTGTGCAGATGGAAACAGATACAAAGgtcagtagta ... tgacatgcagGTTGAGGTTCCAAAGAAAAAGGTGAAGAAAACAAATATTCCTGTATCAGAA
EST: GGGTTCCAGAATCAGGTGACAAGTCTGTGCAGATGGAAACAGATACAAAG GTTGAGGTTCCAAAGAAAAAGGTGAAGAAAACAAATATTCCTGTATCAGAAEST: gi|351045993|gb|FQ441376.1|FQ441376
genomic: GGGTTCCAGAATCAGGTGACAAGTCTGTGCAGATGGAAACAGATACAAAGgtcagtagta ... tgacatgcagGTTGAGGTTCCAAAGAAAAAGGTGAAGAAAACAAATATTCCTGTATCAGAA
EST: GGGTTCCAGAATCAGGTGACAAGTCTGTGCAGATGGAAACAGATACAAAG GTTGAGGTTCCAAAGAAAAAGGTGAAGAAAACAAATATTCCTGTATCAGAAEST: gi|110721835|gb|EE097540.1|EE097540
genomic: GGGTTCCAGAATCAGGTGACAAGTCTGTGCAGATGGAAACAGATACAAAGgtcagtagta ... tgacatgcagGTTGAGGTTCCAAAGAAAAAGGTGAAGAAAACAAATATTCCTGTATCAGAA
EST: GGGTTCCAGAATCAGGTGACAAGTCTGTGCAGATGGAAACAGATACAAAG GTTGAGGTTCCAAAGAAAAAGGTGAAGAAAACAAATATTCCTGTATCAGAAEST: gi|351031000|gb|FQ439036.1|FQ439036
genomic: GGGTTCCAGAATCAGGTGACAAGTCTGTGCAGATGGAAACAGATACAAAGgtcagtagta ... tgacatgcagGTTGAGGTTCCAAAGAAAAAGGTGAAGAAAACAAATATTCCTGTATCAGAA
EST: GGGTTCCAGAATCAGGTGACAAGTCTGTGCAGATGGAAACAGATACAAAG GTTGAGGTTCCAAAGAAAAAGGTGAAGAAAACAAATATTCCTGTATCAGAAEST: gi|351026139|gb|FQ428151.1|FQ428151
genomic: GGGTTCCAGAATCAGGTGACAAGTCTGTGCAGATGGAAACAGATACAAAGgtcagtagta ... tgacatgcagGTTGAGGTTCCAAAGAAAAAGGTGAAGAAAACAAATATTCCTGTATCAGAA
EST: GGGATCCAGAATCAGGTGACAAGTCTGTGCAGATGGAAACAGATACAAAG GTTGAGGTTCCAAAGAAAAAGGTGAAGAAAACAAATATTCCTGTATCAGAAEST: gi|110699605|gb|EE076751.1|EE076751
genomic: GGGTTCCAGAATCAGGTGACAAGTCTGTGCAGATGGAAACAGATACAAAGgtcagtagta ... tgacatgcagGTTGAGGTTCCAAAGAAAAAGGTGAAGAAAACAAATATTCCTGTATCAGAA
EST: GGGTTCCAGAATCAGGTGACAAGTCTGTGCAGATGGAAACAGATACAAAG GTTGAGGTTCCAAAGAAAAAGGTGAAGAAAACAAATATTCCTGTATCAGAAEST: gi|351026310|gb|FQ428322.1|FQ428322
genomic: GGGTTCCAGAATCAGGTGACAAGTCTGTGCAGATGGAAACAGATACAAAGgtcagtagta ... tgacatgcagGTTGAGGTTCCAAAGAAAAAGGTGAAGAAAACAAATATTCCTGTATCAGAA
EST: GGGTTCCAGAATCAGGTGACAAGTCTGTGCAGATGGAAACAGATACAAAG GTTGAGGTTCCAAAGAAAAAGGTGAAGAAAACAAATATTCCTGTATCAGAAEST: gi|349832595|gb|FQ421953.1|FQ421953
genomic: GGGTTCCAGAATCAGGTGACAAGTCTGTGCAGATGGAAACAGATACAAAGgtcagtagta ... tgacatgcagGTTGAGGTTCCAAAGAAAAAGGTGAAGAAAACAAATATTCCTGTATCAGAA
EST: GGGTTCCAGAATCAGGTGACAAGTCTGTGCAGATGGAAACAGATACAAAG GTTGAGGTTCCAAAGAAAAAGGTGAAGAAAACAAATATTCCTGTATCAGAAEST: gi|351044463|gb|FQ442994.1|FQ442994
genomic: GGGTTCCAGAATCAGGTGACAAGTCTGTGCAGATGGAAACAGATACAAAGgtcagtagta ... tgacatgcagGTTGAGGTTCCAAAGAAAAAGGTGAAGAAAACAAATATTCCTGTATCAGAA
EST: GGGTTCCAGAATCAGGTGACAAGTCTGTGCAGATGGAAACAGATACAAAG GTTGAGGTTCCAAAGAAAAAGGTGAAGAAAACAAATATTCCTGTATCAGAAEST: gi|351016635|gb|FQ424062.1|FQ424062
genomic: GGGTTCCAGAATCAGGTGACAAGTCTGTGCAGATGGAAACAGATACAAAGgtcagtagta ... tgacatgcagGTTGAGGTTCCAAAGAAAAAGGTGAAGAAAACAAATATTCCTGTATCAGAA
EST: GGGTTCCAGAATCAGGTGACAAGTCTGTGCAGATGGAAACAGATACAAAG GTTGAGGTTCCAAAGAAAAAGGTGAAGAAAACAAATATTCCTGTATCAGAAEST: gi|71856214|gb|DT005269.1|DT005269
genomic: GGGTTCCAGAATCAGGTGACAAGTCTGTGCAGATGGAAACAGATACAAAGgtcagtagta ... tgacatgcagGTTGAGGTTCCAAAGAAAAAGGTGAAGAAAACAAATATTCCTGTATCAGAA
EST: GGGTTCCAGAATCAGGTGACAAGTCTGTGCAGATGGAAACAGATACAAAG GTTGAGGTTCCAAAGAAAAAGGTGAAGAAAACAAATATTCCTGTATCAGAAEST: gi|351027160|gb|FQ440024.1|FQ440024
genomic: GGGTTCCAGAATCAGGTGACAAGTCTGTGCAGATGGAAACAGATACAAAGgtcagtagta ... tgacatgcagGTTGAGGTTCCAAAGAAAAAGGTGAAGAAAACAAATATTCCTGTATCAGAA
EST: GGGTTCCAGAATCAGGTGACAAGTCTGTGCAGATGGAAACAGATACAAAG GTTGAGGTTCCTAAGAAAAAGGTGAAGAAAACAAATATTCCTGTATCAGAA
genomic: GGGTTCCAGAATCAGGTGACAAGTCTGTGCAGATGGAAACAGATACAAAGgtcagtagta ... tgacatgcagGTTGAGGTTCCAAAGAAAAAGGTGAAGAAAACAAATATTCCTGTATCAGAA
ctgtcgttggaaaaatggcctttggttgttaaataacttaatgattgacatgcagGTTGAGGTTCCAAAGAAAAAGGTGAAGAAAACAAATATTCCTGTATCAGAATTGGTTTATGGTACAATGGTGCCTGCAGATGTGCAAAAAGCTGTAGAAA
ttgttaaataacttaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tccatcaagtgtgtgctcaaatcaattctgattctgaaacatggtctgtcgttggaaaaatggcctttggttgttaaataacttaatgattgacatgcagGTTGAGGTTCCAAAGAAAAAGGTGAAGAAAACAAATATTCCTGTATCAGAATTGGTTTATGGTACAATGGTGCCTGCAGATGTGCAAAAAGCTGTAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
-ccatcaa
- - - - gtgtgtg
- - - - - - - - - aaatcaa
- - - - - - - - - - - - - -ctgattc
- - - - - - - - - - - - - - - - - - - -catggtc
- - - - - - - - - - - - - - - - - - - - - - - - - - -ggaaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaataac