Sequence
atgc intronic sequence ATGC exonic sequencegtaagtggaataaattagaaggtgttttacaaaccttatgataacaccctttaagttaatcaacttctttttttcttttaataattttttatttcccaatggtgcagATGAGGATCCTGCTCTCATTATATACACTAGTGGTACAACAGGGAAACCTAAAGGAGTTGTTCACACACACAAAAGCATTAATTCACAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv09s0002g04170.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA08G21840.1 (Glycine max), 3'ss of exon 4
gtaagtggaataaattagaaggtgttttacaaaccttatgataacaccctttaagttaatcaacttctttttttcttttaataattttttatttcc-----caatggtgcagATGAGGATCCTGCTCTCATTATATACACTAGTGGTACAACAGGGAAACCTAAAGGAGTTGTTCACACACACAAAAGCATTAATTCACAG
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-------------gtaagaaaatcagtttcagtttttataaatggataggttgacttttttgttcgcaagttttagacagttagttctttgttttcaactccattcgcatagGTGAAGATCCAGCACTGATTTTGTACACTAGTGGGACTACAGGTAAACCTAAGGGAGTTGTTCATACACACAAAAGCATCATTTCCCAG
upper sequence: Vv09s0002g04170.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA07G02180.2 (Glycine max), 3'ss of exon 4
gtaagtggaataaattagaaggtgttttacaaaccttatgataacaccctttaagttaatcaacttctttttttcttttaataattttttatttcccaatggtgcagATGAGGATCCTGCTCTCATTATATACACTAGTGGTACAACAGGGAAACCTAAAGGAGTTGTTCACACACACAAAAGCATTAATTCACAG
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gtaag-aaaatcagtttcagt---ttttataaacagagtgggttgaatttttt-gctagcaatttgttgacagttagttctttgtttttcatatcc-attcgcatagGTGAAGATCCAGCACTGATTTTGTACACTAGTGGGACAACGGGTAAACCTAAGGGAGTTGTTCATACACACAGAAGCATCATTTCCCAG
upper sequence: Vv09s0002g04170.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: AT3G16170.1 (Arabidopsis thaliana), 3'ss of exon 4
----------------------gtaagtggaataa-attagaaggtgttttacaaaccttatgataacaccctttaagttaatcaacttctttttttcttttaataattttttatttcccaatggtgcagATGAGGATCCTGCTCTCATTATATACACTAGTGGTACAACAGGGAAACCTAAAGGAGTTGTTCACACACACAAAAGCATTAATTCACAG
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gtaagtttttgaatatacttgagatggtgaacttataatgaaggctgctcttttaatttt-tgccaccttacctcaagc-aatta--ttggtctggattttctgcatcacttcagcctttatttgtgcagATGA---TCCAGCATTGATCGTCTACACTAGTGGTACAACTGGTAAGCCAAAAGGAGTTGTTCATACTCACAACAGCATCAATTCCCAG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.aagttaatcaacttctttttttcttttaataattttttatttcccaatggtgcagATGAGGATCCTGCTCTCATTATATACACTAGTGGTACAACAGGGAAACCTAAAGGAGTTGTTCACACACACAAAAGCATTAATTCACAG
ttttaat putative branch site (score: 3)
ttttttatttccca putative PPT
aatcaacttctttttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtaagtggaataaattagaaggtgttttacaaaccttatgataacaccctttaagttaatcaacttctttttttcttttaataattttttatttcccaatggtgcagATGAGGATCCTGCTCTCATTATATACACTAGTGGTACAACAGGGAAACCTAAAGGAGTTGTTCACACACACAAAAGCATTAATTCACAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG