Sequence
atgc intronic sequence ATGC exonic sequence...gtttactattgattgattcatgttgtatgaaagagaccaattgaattaaaatctttgcttctaactgatggctttgcatgaacacatgctgttcatgcagATGTATGAAGACCTTCCAACAGCTGAAGAAAGATTATGCAGTTCTGAGAAAGAAGCTTGAAACCTATTTTCAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv09s0002g03520.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA13G43110.1 (Glycine max), 3'ss of exon 3
---------------------------------------------------------gtttactattgattgattcatgttgtatg-aaagagaccaattgaattaaaatctttgcttctaactgatggctttgcatgaacacatgctgttcatgcagATGTATGAAGACCTTCCAACAGCTGAAGAAAGATTATGCAGTTCTGAGAAAGAAGCTTGAAACCTATTTTCAG
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gtaaatccagctttaacctaattttcattcaccaacatttcctcgagggaataactaacatttcattgaatgcccttcattatgggtagaaataggaaacatataaaaaattaaaattctagataccaaatttgttagtgtg-----tgaacatgcagATGCAGGAGGAGCTTCCAACAAATGAAGAAAGAATATGCAACACTGAGAAAGAAGCTTGAAACATATTTTCAT
upper sequence: Vv09s0002g03520.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA08G21510.1 (Glycine max), 3'ss of exon 4
--------------------------------------------------------------gtttactattgattgattcatgt-tgtatgaaagagaccaattgaattaaaatctttgctt---ctaactgatggctttgcatgaacac-----atgctgttc----------atgcagATGTATGAAGACCTTCCAACAGCTGAAGAAAGATTATGCAGTTCTGAGAAAGAAGCTTGAAACCTATTTTCAG---------------
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gtaatatatctttcactattatattatagttttaatctcgatttgttttacacaagatgccaagtcagggcacataactgaaggcatatgtgcaaaacattaaataaataaaaatgttccagtgacccaattgtaaattttgc-taaacaatgatggtactgtttttgtttgaatatgcagATGCATGAGGAGCTTCCAACAACTGAAGAGAGAATATGCAGCACTGAGAAAGAAACTTGAAGCTTATTTTCAGGTGACTAGACAATAG
upper sequence: Vv09s0002g03520.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA07G01840.1 (Glycine max), 3'ss of exon 4
-----------------------------gtttactattgattgat-tcatgt-----tgtatgaaagagaccaattgaattaaaat------ctttgcttctaactgatggctttgc------atgaacac-----atgctgttc----------atgcagATGTATGAAGACCTTCCAACAGCTGAAGAAAGATTATGCAGTTCTGAGAAAGAAGCTTGAAACCTATTTTCAG
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gtaatacatctttcactattagattatagttttactctcaatttgtcttacacaagcatatgtgcaaagcattaaataaaaacaaatgatgtttctctcacccaattgtaaattttgctaaccgatgaatagtgatggtactgtttttgtttgaatatgcagATGCATGAGGAGCTTCCAACAACTGAAGAGAGAATATGCTGCACTGAGAAAGAAACTTGAAGCTTATTTTCAG
upper sequence: Vv09s0002g03520.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA15G02260.1 (Glycine max), 3'ss of exon 4
------------------------------------------------------------------------gtttactattgattgattcatgttgtatgaaa-----gagaccaattgaattaaaatctttgcttctaactgatggctttgcatgaacacatgctgttcatgcagATGTATGAAGACCTTCCAACAGCTGAAGAAAGATTATGCAGTTCTGAGAAAGAAGCTTGAAACCTATTTTCAG
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gtaaatccagctttaactttattttcattcaccaacaatcacaagggaataactaacatttcattgaatgcccttcactatgtgtagaatttggaaacataaaattccagacaccagatttgttagagtgtc--cttagtagtgatag--ttgtgttgttgtgtg-tgaacatgcagATGCAGGAGGAGCTTCCAACAAATGAAGAGAGAATATGCAACACTGAGAAAGAAACTTGAAACATATTTTCAGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110428639|gb|EC995116.1|EC995116EST: GGTGAATGCACACTGTTTAGAGAATATTGCAAGGCAGGAAATGGAGAAGG ATGTATGAAGACCTTCCAACAGCTGAAGAAAGATTATGCAGTTCTGAGAAA
genomic: GGTGAATGCACACTGTTTAGAGAATATTGCAAGGCAGGAAATGGAGAAGGgtaagtccat ... gttcatgcagATGTATGAAGACCTTCCAACAGCTGAAGAAAGATTATGCAGTTCTGAGAAA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtttactattgattgattcatgttgtatgaaagagaccaattgaattaaaatctttgcttctaactgatggctttgcatgaacacatgctgttcatgcagATGTATGAAGACCTTCCAACAGCTGAAGAAAGATTATGCAGTTCTGAGAAAGAAGCTTGAAACCTATTTTCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - -tcatgtt
- - - - - - - - - - - - gtatgaaa
- - - - - - - - - - - - - - - - -agaccaa
- - - - - - - - - - - - - - - - - - - - - -aattaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gatggct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gcatgaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cacatgc