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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtattgaacataagcatctaactacttagtagtcaacaatgagtcatcacctgatatgggcaatttgcaattatactttaccattatgttttcgcagGTTTTGCAGAAGCCAGTAGAGGTTGCTGTGGAACAGGGACAATAGAGACAACATCCTTGCTCTGCAACCCAAAATCCATAGGGACTTGCCCAAATGCCAC

Basic information

species Vitis vinifera
transcript Vv09s0002g03140.t01
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv09s0002g03140.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA07G01680.1 (Glycine max), 3'ss of exon 4
--gtattgaacataagcatctaactact-tagtagtcaacaatgagtcatcacctg--atatgggcaatttgcaattatactttaccattatgttttcgcagGTTTTGCAGAAGCCAGTAGAGGTTGCTGTGGAACAGGGACAATAGAGACAACATCCTTGCTCTGCAACCCAAAATCCATAGGGACTTGCCCAAATGCCAC
   |  |  | |    |||| || ||      ||   |  ||  | ||||  | ||   ||     |  ||     ||  |  |   || ||| |||   ||||||||  || || |  |||||||||||||| || |||||  ||||||||||||||||| | || ||  |||||||   ||| |||||  | ||||||||
tgcttatagagaagttcatccaaataaggccatatatagtaac-attcatatcttgcagtaaaatgatgttctttctaaccaatcttatgatgcttt-atagGTTTTGTGGAGGCAAACAGAGGTTGCTGTGGTACCGGGACTGTAGAGACAACATCCTTGTTGTGTAATTCAAAATCTCCAGGAACTTGTTCTAATGCCAC
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|30252467|gb|CB970018.1|CB970018
EST:     TGACATTTATAAGCCCCTCTATGATATCATCAAGTCTCCTTCAGACTACG                         GTTTTGCAGAAGCCAGTAGAGGTTGCTGTGGAACAGGGACAATAGAGACAA
genomic: TGACATTTATAAGCCCCTCTATGATATCATCAAGTCTCCTTCAGACTACGgtattgaaca ... gttttcgcagGTTTTGCAGAAGCCAGTAGAGGTTGCTGTGGAACAGGGACAATAGAGACAA
EST: gi|46911121|gb|CN546496.1|CN546496
EST:     TGACATTTATAAGCCCCTCTATGATATCATCAAGTCTCCTTCAGACTACG                         GTTTTGCAGAAGCCAGTAGAGGTTGCTGTGGAACAGGGACAATAGAGACAA
genomic: TGACATTTATAAGCCCCTCTATGATATCATCAAGTCTCCTTCAGACTACGgtattgaaca ... gttttcgcagGTTTTGCAGAAGCCAGTAGAGGTTGCTGTGGAACAGGGACAATAGAGACAA
EST: gi|110685627|gb|EE062512.1|EE062512
EST:     TGACATTTATAAGCCCCTCTATGATATCATCAAGTCTCCTTCAGACTACG                         GTTTTGCAGAAGCCAGTAGAGGTTGCTGTGGAACAGGGACAATAGAGACAA
genomic: TGACATTTATAAGCCCCTCTATGATATCATCAAGTCTCCTTCAGACTACGgtattgaaca ... gttttcgcagGTTTTGCAGAAGCCAGTAGAGGTTGCTGTGGAACAGGGACAATAGAGACAA
EST: gi|110416850|gb|EC982858.1|EC982858
EST:     TGACATTTATAAGCCCCTCTATGATATCATCAAGTCTCCTTCAGACTACG                         GTTTTGCAGAAGCCAGTAGAGGTTGCTGTGGAACAGGAACGATAGAGACAA
genomic: TGACATTTATAAGCCCCTCTATGATATCATCAAGTCTCCTTCAGACTACGgtattgaaca ... gttttcgcagGTTTTGCAGAAGCCAGTAGAGGTTGCTGTGGAACAGGGACAATAGAGACAA
EST: gi|110373636|gb|EC937890.1|EC937890
EST:     GACATTTATAAGCCCCTCTATGATATCATCAAAGTCTCCTTCAGACTACG                         GTTTTGCAGAAGCCAGTAGAGGTTGCTGTGGAACAGGGACAATAGAGACAA
genomic: GACATTTATAAGCCCCTCTATGATATCATC-AAGTCTCCTTCAGACTACGgtattgaaca ... gttttcgcagGTTTTGCAGAAGCCAGTAGAGGTTGCTGTGGAACAGGGACAATAGAGACAA
EST: gi|110708719|gb|EE086584.1|EE086584
EST:     TGACATTTATAAGCCCCTCTATGATATCATCAAGTCTCCTTCAGACTACG                         GTTTTGCAGAAGCCAGTAGAGGTTGCTGTGGAACAGGAACGATAGAGACAA
genomic: TGACATTTATAAGCCCCTCTATGATATCATCAAGTCTCCTTCAGACTACGgtattgaaca ... gttttcgcagGTTTTGCAGAAGCCAGTAGAGGTTGCTGTGGAACAGGGACAATAGAGACAA
EST: gi|30297241|gb|CB974035.1|CB974035
EST:     TGACATTTATAAGCCCCTCTATGATATCATCAAGTCTCCTTCAGACTACG                         GTTTTGCAGAAGCCAGTAGAGGTTGCTGTGGAACAGGGACAATAGAGACAA
genomic: TGACATTTATAAGCCCCTCTATGATATCATCAAGTCTCCTTCAGACTACGgtattgaaca ... gttttcgcagGTTTTGCAGAAGCCAGTAGAGGTTGCTGTGGAACAGGGACAATAGAGACAA
EST: gi|30324270|gb|CD007532.1|CD007532
EST:     TGACATTTATAAGCCCCTCTATGATATCATCAAGTCTCCTTCAGACTACG                         GTTTTGCAGAAGCCAGTAGAGGTTGCTGTGGAACAGGGACAATAGAGACAA
genomic: TGACATTTATAAGCCCCTCTATGATATCATCAAGTCTCCTTCAGACTACGgtattgaaca ... gttttcgcagGTTTTGCAGAAGCCAGTAGAGGTTGCTGTGGAACAGGGACAATAGAGACAA
EST: gi|349829471|gb|FQ420003.1|FQ420003
EST:     TGACATTTATAAGCCCCTCTATGATATCATCAAGTCTCCTTCAGACTACG                         GTTTTGCAGAAGCCAGTAGAGGTTGCTGTGGAACAGGGACAATAGAGACAA
genomic: TGACATTTATAAGCCCCTCTATGATATCATCAAGTCTCCTTCAGACTACGgtattgaaca ... gttttcgcagGTTTTGCAGAAGCCAGTAGAGGTTGCTGTGGAACAGGGACAATAGAGACAA
EST: gi|30297185|gb|CB973979.1|CB973979
EST:     TGACATTTATAAGCCCCTCTATGATATCATCAAGTCTCCTTCAGACTACG                         GTTTTGCAGAAGCCAGTAGAGGTTGCTGTGGAACAGGGACAATAGAGACAA
genomic: TGACATTTATAAGCCCCTCTATGATATCATCAAGTCTCCTTCAGACTACGgtattgaaca ... gttttcgcagGTTTTGCAGAAGCCAGTAGAGGTTGCTGTGGAACAGGGACAATAGAGACAA
EST: gi|110705990|gb|EE083468.1|EE083468
EST:     TGACATTTATAAGCCCCTCTATGATATCATCAAGTCTCCTTCAGACTACG                         GTTTTGCAGAAGCCAGTAGAGGTTGCTGTGGAACAGGAACGATAGAGACAA
genomic: TGACATTTATAAGCCCCTCTATGATATCATCAAGTCTCCTTCAGACTACGgtattgaaca ... gttttcgcagGTTTTGCAGAAGCCAGTAGAGGTTGCTGTGGAACAGGGACAATAGAGACAA
EST: gi|110707884|gb|EE084789.1|EE084789
EST:     TGACATTTATAAGCCCCTCTATGATATCATCAAGTCTCCTTCAGACTACG                         GTTTTGCAGAAGCCAGTAGAGGTTGCTGTGGAACAGGGACAATAGAGACAA
genomic: TGACATTTATAAGCCCCTCTATGATATCATCAAGTCTCCTTCAGACTACGgtattgaaca ... gttttcgcagGTTTTGCAGAAGCCAGTAGAGGTTGCTGTGGAACAGGGACAATAGAGACAA
EST: gi|110690689|gb|EE068066.1|EE068066
EST:     TGACATTTATAAGCCCCTCTATGATATCATCAAGTCTCCTTCAGACTACG                         GTTTTGCAGAAGCCAGTAGAGGTTGCTGTGGAACAGGGACAATAGAGACAA
genomic: TGACATTTATAAGCCCCTCTATGATATCATCAAGTCTCCTTCAGACTACGgtattgaaca ... gttttcgcagGTTTTGCAGAAGCCAGTAGAGGTTGCTGTGGAACAGGGACAATAGAGACAA
EST: gi|110398746|gb|EC965220.1|EC965220
EST:     TGACATTTATAAGCCCCTCTATGATATCATCAAGTCTCCTTCAGACTACG                         GTTTTGCAGAAGCCAGTAGAGGTTGCTGTGGAACAGGGACAATAGAGACAA
genomic: TGACATTTATAAGCCCCTCTATGATATCATCAAGTCTCCTTCAGACTACGgtattgaaca ... gttttcgcagGTTTTGCAGAAGCCAGTAGAGGTTGCTGTGGAACAGGGACAATAGAGACAA
EST: gi|34320273|gb|CF373027.1|CF373027
EST:     TGACATTTATAAGCCCCTCTATGATATCATCAAGTCTCCTTCAGACTACG                         GTTTTGCAGAAGCCAGTAGAGGTTGCTGTGGAACAGGGACAATAGAGACAA
genomic: TGACATTTATAAGCCCCTCTATGATATCATCAAGTCTCCTTCAGACTACGgtattgaaca ... gttttcgcagGTTTTGCAGAAGCCAGTAGAGGTTGCTGTGGAACAGGGACAATAGAGACAA
EST: gi|110382424|gb|EC939518.1|EC939518
EST:     TGACATTTATAAGCCCCTCTATGATATCATCAAGTCTCCTTCAGACTACG                         GTTTTGCAGAAGCCAGTAGAGGTTGCTGTGGAACAGGGACAATAGAGACAA
genomic: TGACATTTATAAGCCCCTCTATGATATCATCAAGTCTCCTTCAGACTACGgtattgaaca ... gttttcgcagGTTTTGCAGAAGCCAGTAGAGGTTGCTGTGGAACAGGGACAATAGAGACAA
EST: gi|110693430|gb|EE069653.1|EE069653
EST:     TGACATTTATAAGCCCCTCTATGATATCATCAAGTCTCCTTCAGACTACG                         GTTTTGCAGAAGCCAGTAGAGGTTGCTGTGGAACAGGGACAATAGAGACNA
genomic: TGACATTTATAAGCCCCTCTATGATATCATCAAGTCTCCTTCAGACTACGgtattgaaca ... gttttcgcagGTTTTGCAGAAGCCAGTAGAGGTTGCTGTGGAACAGGGACAATAGAGACAA
EST: gi|87586795|gb|DY474925.1|DY474925
EST:     TGACATTTATAAGCCCCTCTATGATATCATCAAGTCTCCTTCAGACTACG                         GTTTTGCAGAAGCCAGTAGAGGTTGCTGTGGAACAGGGACAATAGAGACAA
genomic: TGACATTTATAAGCCCCTCTATGATATCATCAAGTCTCCTTCAGACTACGgtattgaaca ... gttttcgcagGTTTTGCAGAAGCCAGTAGAGGTTGCTGTGGAACAGGGACAATAGAGACAA
EST: gi|110361815|gb|EC925315.1|EC925315
EST:     TGACATTTATAAGCCCCTCTATGATATCATCAAGTCTCCTTCAGACTACG                         GTTTTGCAGAAGCCAGTAGAGGTTGCTGTGGAACAGGGACAATAGAGACAA
genomic: TGACATTTATAAGCCCCTCTATGATATCATCAAGTCTCCTTCAGACTACGgtattgaaca ... gttttcgcagGTTTTGCAGAAGCCAGTAGAGGTTGCTGTGGAACAGGGACAATAGAGACAA
EST: gi|110426154|gb|EC992551.1|EC992551
EST:     TGACATTTATAAGCCCCTCTATGATATCATCAAGTCTCCTTCAGACTACG                         GTTTTGCAGAAGCCAGTAGAGGTTGCTGTGGAACAGGAACGATAGAGACAA
genomic: TGACATTTATAAGCCCCTCTATGATATCATCAAGTCTCCTTCAGACTACGgtattgaaca ... gttttcgcagGTTTTGCAGAAGCCAGTAGAGGTTGCTGTGGAACAGGGACAATAGAGACAA
EST: gi|33405189|gb|CF210816.1|CF210816
EST:     TGACATTTATAAGCCCCTCTATGATATCATCAAGTCTCCTTCAGACTACG                         GTTTTGCAGAAGCCAGTAGAGGTTGCTGTGGAACAGGGACAATAGAGACAA
genomic: TGACATTTATAAGCCCCTCTATGATATCATCAAGTCTCCTTCAGACTACGgtattgaaca ... gttttcgcagGTTTTGCAGAAGCCAGTAGAGGTTGCTGTGGAACAGGGACAATAGAGACAA
EST: gi|110689277|gb|EE065361.1|EE065361
EST:     TGACATTTATAAGCCCCTCTATGATATCATCAAGTCTCCTTCAGACTACG                         GTTTTGCAGAAGCCAGTAGAGGTTGCTGTGGAACAGGGACAATAGAGACAA
genomic: TGACATTTATAAGCCCCTCTATGATATCATCAAGTCTCCTTCAGACTACGgtattgaaca ... gttttcgcagGTTTTGCAGAAGCCAGTAGAGGTTGCTGTGGAACAGGGACAATAGAGACAA
EST: gi|110372095|gb|EC936240.1|EC936240
EST:     TGACATTTATAAGCCCCTCTATGATATCATCAAGTCTCCTTCAGACTACG                         GTTTTGCAGAAGCCAGTAGAGGTTGCTGTGGAACAGGGACAATAGAGACAA
genomic: TGACATTTATAAGCCCCTCTATGATATCATCAAGTCTCCTTCAGACTACGgtattgaaca ... gttttcgcagGTTTTGCAGAAGCCAGTAGAGGTTGCTGTGGAACAGGGACAATAGAGACAA
EST: gi|30323892|gb|CD007154.1|CD007154
EST:     TGACATTTATAAGCCCCTCTATGATATCATCAAGTCTCCTTCAGACTACG                         GTTTTGCAGAAGCCAGTAGAGGTTGCTGTGGAACAGGGACAATAGAGACAA
genomic: TGACATTTATAAGCCCCTCTATGATATCATCAAGTCTCCTTCAGACTACGgtattgaaca ... gttttcgcagGTTTTGCAGAAGCCAGTAGAGGTTGCTGTGGAACAGGGACAATAGAGACAA
EST: gi|110693427|gb|EE069650.1|EE069650
EST:     CATTTATAAGCCCCTCTATGATATCATCAAGTCTCCTTCAGACTACG                         GTTTTGCAGAAGCCAGTAGAGGTTGCTGTGGAACAGGGACAATAGAGACAA
genomic: CATTTATAAGCCCCTCTATGATATCATCAAGTCTCCTTCAGACTACGgtattgaaca ... gttttcgcagGTTTTGCAGAAGCCAGTAGAGGTTGCTGTGGAACAGGGACAATAGAGACAA
EST: gi|83276501|gb|DV940509.1|DV940509
EST:     TGACATTTATAAGCCCCTTTATGATATCATCAAGTTTCCTTCAGACTACG                         GTTTTGCAGAAGCCAGTAGAGGTTGCTGTGGAACAGGGACAATAGAGACAA
genomic: TGACATTTATAAGCCCCTCTATGATATCATCAAGTCTCCTTCAGACTACGgtattgaaca ... gttttcgcagGTTTTGCAGAAGCCAGTAGAGGTTGCTGTGGAACAGGGACAATAGAGACAA
EST: gi|110427216|gb|EC993650.1|EC993650
EST:     TGACATTTATAAGCCCCTCTATGATATCATCAAGTCTCCTTCAGACTACG                         GTTTTGCAGAAGCCAGTAGAGGTTGCTGTGGAACAGGAACGATAGAGACAA
genomic: TGACATTTATAAGCCCCTCTATGATATCATCAAGTCTCCTTCAGACTACGgtattgaaca ... gttttcgcagGTTTTGCAGAAGCCAGTAGAGGTTGCTGTGGAACAGGGACAATAGAGACAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtcatcacctgatatgggcaatttgcaattatactttaccattatgttttcgcagGTTTTGCAGAAGCCAGTAGAGGTTGCTGTGGAACAGGGACAATAGAGACAACATCCTTGCTCTGCAACCCAAAATCCATAGGGACTTGCCCAAATGCCAC
      acctgat  putative branch site (score: 4)
                                            tgttttc  putative PPT
                   aatttgcaattata  TA-rich tract