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...atatatttgcctatacaattctccattctgtgtttgttgtcataaggatattattctgtgaagtgtgaactgataaaaaaatgtcctttgttcttttcagCTTGCCTTTCCAGATGCTATATATTTGGTTGATGCTATTCAGGGAGGGGAGAAGCTAATGAAAGCTTGTAAGCCTGCTCTAGAGTCCAGCTATATAACTA
species | Vitis vinifera |
transcript | Vv09s0002g02690.t01 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: ATTGTGAGGGTGTTGACCTTTGTCGTCATGGAAGTCTTTGCATCATGCAG CTTGCCTTTCCAGATGCTATATATTTGGTTGATGCTATTCAGGGAGGGGAGEST: gi|71861468|gb|DT010523.1|DT010523
genomic: ATTGTGAGGGTGTTGACCTTTGTCGTCATGGAAGTCTTTGCATCATGCAGgtgattattc ... ttcttttcagCTTGCCTTTCCAGATGCTATATATTTGGTTGATGCTATTCAGGGAGGGGAG
EST: ATTGTGAGGGTGTTGACCTTTGTCGTCATGGAAGTCTTTGCATCATGCAG CTTGCCTTTCCAGATGCTATATATTTGGTTGATGCTATTCAGGGAGGGGAGEST: gi|110688773|gb|EE067709.1|EE067709
genomic: ATTGTGAGGGTGTTGACCTTTGTCGTCATGGAAGTCTTTGCATCATGCAGgtgattattc ... ttcttttcagCTTGCCTTTCCAGATGCTATATATTTGGTTGATGCTATTCAGGGAGGGGAG
EST: ATTGTGAGGGTGTTGACCTTTGTCGTCATGGAAGTCTTTGCATCATGCAG CTTGCCTTTCCAGATGCTATATATTTGGTTGATGCTATTCAGGGAGGGGAGEST: gi|34543088|gb|CF511320.1|CF511320
genomic: ATTGTGAGGGTGTTGACCTTTGTCGTCATGGAAGTCTTTGCATCATGCAGgtgattattc ... ttcttttcagCTTGCCTTTCCAGATGCTATATATTTGGTTGATGCTATTCAGGGAGGGGAG
EST: ATTGTGAGGGTGTTGACCTTTGTCGTCATGGAAGTCTTTGCATCATGCAG CTTGCCTTTCCAGATGCTATATATTTGGTTGATGCTATTCAGGGAGGGGAG
genomic: ATTGTGAGGGTGTTGACCTTTGTCGTCATGGAAGTCTTTGCATCATGCAGgtgattattc ... ttcttttcagCTTGCCTTTCCAGATGCTATATATTTGGTTGATGCTATTCAGGGAGGGGAG
ggatattattctgtgaagtgtgaactgataaaaaaatgtcctttgttcttttcagCTTGCCTTTCCAGATGCTATATATTTGGTTGATGCTATTCAGGGAGGGGAGAAGCTAATGAAAGCTTGTAAGCCTGCTCTAGAGTCCAGCTATATAACTA
aactgat putative branch site (score: 3)
tgtcctttgttctttt putative PPT
aactgataaaaaaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atatatttgcctatacaattctccattctgtgtttgttgtcataaggatattattctgtgaagtgtgaactgataaaaaaatgtcctttgttcttttcagCTTGCCTTTCCAGATGCTATATATTTGGTTGATGCTATTCAGGGAGGGGAGAAGCTAATGAAAGCTTGTAAGCCTGCTCTAGAGTCCAGCTATATAACTA
- - - -tgcctat
- - - - - - - - - - - ccattct
- - - - - - - - - - - - - - - - - tgttgtc
- - - - - - - - - - - - - - - - - - - - -ataagga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaaaaaa