1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...ttcttctcttttatcagaagatctaagcaattgcttgctgtaacaagtttagtttttatcgcatttgattttttggcatccaatgcagatctgcttttagGGGGAGCTGGAGAAGTGTAGAGCCAGACAATGGCTTTTTTGATAGGAGCACTGATTCCGTGCAGACGACTCCACGTGACAAGATAATGTCCAGCAGTAAG
species | Vitis vinifera |
transcript | Vv09s0002g01830.t01 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
agtttagtttttatcgcatttgattttttggcatccaatgcagatctgcttttagGGGGAGCTGGAGAAGTGTAGAGCCAGACAATGGCTTTTTTGATAGGAGCACTGATTCCGTGCAGACGACTCCACGTGACAAGATAATGTCCAGCAGTAAG
atttgat putative branch site (score: 5)
tctgctttt putative PPT
atttgatttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttcttctcttttatcagaagatctaagcaattgcttgctgtaacaagtttagtttttatcgcatttgattttttggcatccaatgcagatctgcttttagGGGGAGCTGGAGAAGTGTAGAGCCAGACAATGGCTTTTTTGATAGGAGCACTGATTCCGTGCAGACGACTCCACGTGACAAGATAATGTCCAGCAGTAAG
- - - - - - - - - - - ctaagca
- - - - - - - - - - - - - - - - gcttgct
- - - - - - - - - - - - - - - - - - - -gtaacaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gcatttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ccaatgc