Skip to another splice site:
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 5'  3'   		2  
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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtctgttctattatatctctgtttctttactagttgtaatatttttgcatacttcatggtgaagaacattattttgctaattgttagaagttcatgctcattgcttattgctggatttttcaatatgtgcaagttttgactggctttgttgtttttctgataattcattaattttttttgctgctgtcagATCTATGACATTTTCCAGCTGCTGCCATCTAAAGTCCAGGTTGGAGTGTTCTCTGCCACAATGCCCCCTGAGGCCCTTGAGATCACTCGAAAGTTCATGA

Basic information

species Vitis vinifera
transcript Vv09s0002g01760.t01
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv09s0002g01760.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA07G00950.1 (Glycine max), 3'ss of exon 4
gtctgttctattatatctctgtttctttactagttgtaatatttttgcatacttcatggtgaagaacattattttgctaattgttagaagttcatgctcattgcttattgctggatttttcaatatgtgcaagttttgactggctttgttgtttttctgataattcattaattttttttgctgctgtcagATCTATGACATTTTCCAGCTGCTGCCATCTAAAGTCCAGGTTGGAGTGTTCTCTGCCACAATGCCCCCTGAGGCCCTTGAGATCACTCGAAAGTTCATGA
                                                                              | || | |||||   |    || |  |||||  |    |   ||  ||     | |||       |  | ||   |   ||| | |     ||||||  ||| || || |||||||||||||| || |||||||||||||| ||| | |||||||||||||||||||| |||||||| || || ||||||||||| ||  ||||||||||||
------------------------------------------------------------------------------agttataagaag---aaatacaatatttatttat---ctggacaggatacaagaatttcc-----ccctcttccatgcttgacattgtgaaaattttggttggtgttg-cagATCTATGACATCTTTCAGCTGCTGCCATCCAAAATTCAGGTTGGAGTGTTCTCTGCTACAATGCCACCAGAAGCCCTTGAGATTACAAGAAAGTTCATGA

upper sequence: Vv09s0002g01760.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA08G20300.3 (Glycine max), 3'ss of exon 4
gtctgttctattatatctctgtttctttactagttgtaatatttttgcatacttcatggtgaagaacattattttgctaattgttagaagttcatgctcattgcttattgctggatttttcaatatgtgcaagttttgactggctttgttgtttttctgataattcattaattttttttgctgctgtcagATCTATGACATTTTCCAGCTGCTGCCATCTAAAGTCCAGGTTGGAGTGTTCTCTGCCACAATGCCCCCTGAGGCCCTTGAGATCACTCGAAAGTTCATGA
                                                                                        ||   |     ||| |  |   |    || |   | |  || ||   || |    |||   || ||    || | |     ||||||  ||| || || |||||||||||||| ||||||||||||||||| ||| | |||||||||||||||||||| |||||||| || || |||||||| || ||  | ||||||||||
------------------------------------------------------------------------------------ggacaggatacaagaatttcccaaaac-aatttctgtgagaaatgtaacagtttatgttcttccatgctt----gacattgtgaaaattttggttggtgttg-cagATCTATGACATCTTCCAGCTGCTGCCATCCAAAATTCAGGTTGGAGTGTTCTCTGCTACAATGCCGCCAGAAGCCCTTGAAATTACAAGGAAGTTCATGA

upper sequence: Vv09s0002g01760.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA15G03020.1 (Glycine max), 3'ss of exon 4
gtctgttctattatatctc-tgtttctttactagttgtaatatttttgcatacttcatggtgaagaacattattttgctaattgttagaagttcatgctcattgcttattgctggatttttcaatatgtgcaagttttgactggctttgttgtttttctgataattcattaattttttttgc-tgctgt-cagATCTATGACATTTTCCAGCTGCTGCCATCTAAAGTCCAGGTTGGAGTGTTCTCTGCCACAATGCCCCCTGAGGCCCTTGAGATCACTCGAAAGTTCATGA
    |||  ||  | |  | |||||  |    |  | | |  | |||   | |||     |||    |||        |  ||  |  | ||| |   | |||  |||||       | |    ||  || ||||  |   ||  || | |   |  || | | || ||  ||||||  ||| ||   | |||||||||||||| |||||||| ||||||  | || | |||||||||||||||||||| |||||||| ||||||||||| ||||| ||  | ||||||||||
----gtttgatggttttccatgttttgtctaaaactttgaattgttt---ttcttttccttgagtgtcatctaaacattctttcatgcatgttgaaa-taattctttatttaaaacctgtgtgctagatg-aagtcatc-ttgtgttagatagatagctaacagtttat--atttttcgtgcatgaaatgcagATCTATGACATCTTCCAGCTACTGCCAGGTCAAATTCAGGTTGGAGTGTTCTCTGCTACAATGCCACCTGAGGCCCTGGAGATTACAAGGAAGTTCATGA

upper sequence: Vv09s0002g01760.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA13G42360.1 (Glycine max), 3'ss of exon 4
gtctgttctattatatctctgtttctttactagttgtaatatttttgcatacttcatggtgaagaacattattttgctaattgttagaagttcatgctcattgcttattgctggatttttcaatatgtgcaagttttgactggctttgttgtttttctgataattcattaattttttttgc-tgctgt-cagATCTATGACATTTTCCAGCTGCTGCCATCTAAAGTCCAGGTTGGAGTGTTCTCTGCCACAATGCCCCCTGAGGCCCTTGAGATCACTCGAAAGTTCATGA
                                                                        |||  |  |||||  ||          |||  |  ||  |  |   |   |||||||| || |  ||   |   | |||| ||   || | || ||  ||||||  ||| ||   | |||||||||||||| |||||||| |||||   | || | |||||||||||||||||||| |||||||| ||||||||| | ||||| ||  | ||||||||||
------------------------------------------------------------------------tttatt--ttgttgaaa---------tatttttctttatttaaaactcacatatgtgctagat--ga--agtcatcttgtgtt---gacattttat--atttttcgtgcatgaaatgcagATCTATGACATCTTCCAGCTTCTGCCGGGTCAAATTCAGGTTGGAGTGTTCTCTGCTACAATGCCACCTGAGGCCTTGGAGATTACGAGGAAGTTCATGA

upper sequence: Vv09s0002g01760.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: AT1G72730.1 (Arabidopsis thaliana), 3'ss of exon 4
gtctgttctattatatctctgtttctttactagttgtaatatttttgcatacttcatggtgaagaacattattttgctaattgttagaagttcatgctcatt--gcttattgctggatttttcaatatgtgcaagttttgactggctttgttgtttttctgataattcattaattttttttgctgctgtcagATCTATGACATTTTCCAGCTGCTGCCATCTAAAGTCCAGGTTGGAGTGTTCTCTGCCACAATGCCCCCTGAGGCCCTTGAGATCACTCGAAAGTTCATGA
                                                                                         ||| |  ||  ||     |     |    |||||  | | |    | |   |     |   ||||| || | ||      || |||| |       ||||||||| || ||||| |||||||| || || || || || |||||||| || |||||||| |||||||| || || ||||||||||||||  | ||||||||||
-----------------------------------------------------------------------------------------gtttaatcttgtttaatctcccattcacattttctttttctctctgataaaatcaagtcatttgttcttataat------ttgatttct-------ctgtcagATATACGACATCTTCCAGCTTCTTCCTTCCAAGGTTCAGGTTGGTGTTTTCTCTGCTACAATGCCTCCCGAAGCCCTTGAGATCACAAGGAAGTTCATGA

upper sequence: Vv09s0002g01760.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: AT3G13920.2 (Arabidopsis thaliana), 3'ss of exon 4
gtctgttctattatatctctgtttctttactagttgtaatatttttgcatacttcatggtgaagaacattattttgctaattgttagaagttcatgctcattgcttattgctggatttttcaatatgtgcaagttttgactggctttgttgtttttctgataattcattaattttttttgctgctgtcagATCTATGACATTTTCCAGCTGCTGCCATCTAAAGTCCAGGTTGGAGTGTTCTCTGCCACAATGCCCCCTGAGGCCCTTGAGATCACTCGAAAGTTCATGA
                                                                                                         |||      |||| ||| | | | |||  ||  | |  | || | ||||  ||   |  ||| |  ||| |   | |  | ||||||||||||||| |||||||| || ||| | ||  |||| ||||| |||||||| || |||||||| || || || |||||||||||  | ||||||||||
--------------------------------------------------------------------------------------------------------gtatgcaaatatttctcagtgttt-caa--ttccattctcgttatagtttaacttgaatctcactggtttctg--ggttttttcagATCTATGACATATTCCAGCTTCTTCCACCAAAGATCCAAGTTGGTGTGTTCTCCGCAACAATGCCACCAGAAGCTCTTGAGATCACAAGGAAGTTCATGA

upper sequence: Vv09s0002g01760.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: AT1G54270.2 (Arabidopsis thaliana), 3'ss of exon 4
gtctgttctattatatctctgtttctttactagttgtaatatttttgcatacttcatggtgaagaacattattttgctaattgttagaagttcatgctcattgcttattgctggatttttcaatatgtgcaagttttgactggctttgttgtttttctgataattcattaattttttttgctgctgtcagATCTATGACATTTTCCAGCTGCTGCCATCTAAAGTCCAGGTTGGAGTGTTCTCTGCCACAATGCCCCCTGAGGCCCTTGAGATCACTCGAAAGTTCATGA
                                                                                               | |  ||   |  | |    |||      || | |    | ||  |  || || | ||    || |  |   ||  ||| |  ||    || |||||||||||||| |||||||| || ||| | ||  | |||||||||||||||||||| |||||||| || || ||  | ||||||||  |||| |||||||
-----------------------------------------------------------------------------------------------gtttgttatcttcttcaaagttt----gaatctaccctctgtggttatctctgatattgacttggttttgtgttgttttctggtgaatttg-cagATCTATGACATATTCCAGCTTCTCCCACCAAAGATTCAGGTTGGAGTGTTCTCTGCGACAATGCCTCCGGAAGCTTTGGAGATCACAAGAAAATTCATGA

upper sequence: Vv09s0002g01760.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: EFJ16567 (Selaginella moellendorffii), 3'ss of exon 3
gtctgttctattatatctctgtttctttactagttgtaatatttttgcatacttcatggtgaagaacattattttgctaattgttagaagttcatgctcattgcttattgctggatttttcaatatgtgcaagttttgactggctttgttgtttttctgataattcattaattttttttgctgctgtcagATCTATGACATTTTCCAGCTGCTGCCATCTAAAGTCCAGGTTGGAGTGTTCTCTGCCACAATGCCCCCTGAGGCCCTTGAGATCACTCGAAAGTTCATGA
                                                                                                                                | ||| |   |       ||  || | | | |  |  | |   | |   |||    |  ||||| || ||||| |||||||| || || || || |||||||| ||  | ||||| ||||||||||| || ||||| || |||||||| || ||||||||||
--------------------------------------------------------------------------------------------------------------------------------gtaaggtggaaggaaagctg--gtctatataaccaccc-tgcctgtgccttgtgtgtcgcagATTTACGACATCTTCCAGCTCCTTCCCTCCAAGGTCCAGGTGGGCCTCTTCTCCGCCACAATGCCGCCCGAGGCGCTGGAGATCACCCGCAAGTTCATGA

upper sequence: Vv09s0002g01760.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: EFJ16547 (Selaginella moellendorffii), 3'ss of exon 3
gtctgttctattatatctctgtttctttactagttgtaatatttttgcatacttcatggtgaagaacattattttgctaattgttagaagttcatgctcattgcttattgctggatttttcaatatgtgcaagttttgactggctttgttgtttttctgataattcattaattttttttgctgctgtcagATCTATGACATTTTCCAGCTGCTGCCATCTAAAGTCCAGGTTGGAGTGTTCTCTGCCACAATGCCCCCTGAGGCCCTTGAGATCACTCGAAAGTTCATGA
                                                                                   |   || |||   ||   |    ||| |    || |||    ||    |||| |   ||| ||| |  | ||  || | |       ||| | | |  | |    |||||||||| || |||||||| |||||  | || |||||||| ||  | ||||| ||||| ||||| || ||||| || |||||||| || ||||||||||
---------------------------------------------------------------------------------cttcttaacttctctctgtctttagatttc---gttcttctgactggttgagttct--ttggatttttcatcttgttgctcacgacgcgattctctgttttac----agATCTATGATATCTTCCAGCTCCTGCCCGCCAAGGTCCAGGTGGGCCTCTTCTCCGCCACCATGCCGCCCGAGGCGCTGGAGATCACCCGCAAGTTCATGA

upper sequence: Vv09s0002g01760.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: EFJ32259 (Selaginella moellendorffii), 3'ss of exon 3
gtctgttctattatatctctgtttctttactagttgtaatatttttgcatacttcatggtgaagaacattattttgctaattgttagaagttcatgctcattgcttattgctggatttttcaatatgtgcaagttttgactggctttgttgtttttctgataattcattaattttttttgctgctgtcagATCTATGACATTTTCCAGCTGCTGCCATCTAAAGTCCAGGTTGGAGTGTTCTCTGCCACAATGCCCCCTGAGGCCCTTGAGATCACTCGAAAGTTCATGA
                                                                                    |     ||| | |   ||| ||     |   || |||    ||    |||| |   ||| ||| |  |  |  || | |       ||| | | |  | |    |||||||||| || |||||||| |||||  | || |||||||| ||  | ||||| ||||| ||||| || ||||| || |||||||| || ||||||||||
-----------------------------------------------------------------------------------ctttgtcttcct-cgtgttggtttagatttcgttcttctgactggttgagttct--ttggatttttcatcctgttgctcacgacgcgattctctgttttac----agATCTATGATATCTTCCAGCTCCTGCCCGCCAAGGTCCAGGTGGGCCTCTTCTCCGCCACCATGCCGCCCGAGGCGCTGGAGATCACCCGCAAGTTCATGA

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110694945|gb|EE072402.1|EE072402
EST:     TTGTATTGGATGAGGCTGATGAAATGCTTTCGCGAGGTTTCAAGGATCAG                         ATCTATGACATTTTCCAGCTGCTGCCATCTAAAGTCCAGGTTGGAGTGTTC
genomic: TTGTATTGGATGAGGCTGATGAAATGCTTTCACGAGGTTTCAAGGATCAGgtctgttcta ... ctgctgtcagATCTATGACATTTTCCAGCTGCTGCCATCTAAAGTCCAGGTTGGAGTGTTC
EST: gi|71881833|gb|DT030888.1|DT030888
EST:     TTGTATTGGATGAGGCTGATGAAATGCTTTCACGAGGTTTCAAGGATCAG                         ATCTATGACATTTTCCAGCTGCTGCCATCTAAAGTCCAGGTTGGAGTGTTC
genomic: TTGTATTGGATGAGGCTGATGAAATGCTTTCACGAGGTTTCAAGGATCAGgtctgttcta ... ctgctgtcagATCTATGACATTTTCCAGCTGCTGCCATCTAAAGTCCAGGTTGGAGTGTTC
EST: gi|71890322|gb|DT039377.1|DT039377
EST:     TTGTATTGGATGAGGCTGATGAAATGCTTTCACGAGGTTTCAAGGATCAG                         ATCTATGACATTTTCCAGCTGCTGCCATCTAAAGTCCAGGTTGGAGTGTTC
genomic: TTGTATTGGATGAGGCTGATGAAATGCTTTCACGAGGTTTCAAGGATCAGgtctgttcta ... ctgctgtcagATCTATGACATTTTCCAGCTGCTGCCATCTAAAGTCCAGGTTGGAGTGTTC
EST: gi|77583116|gb|DV220594.1|DV220594
EST:     TTGTATTGGATGAGGCTGATGAAATGCTTTCACGAGGTTTCAAGGATCAG                         ATCTATGACATTTTCCAGCTGCTGCCATCTAAAGTCCAGGTTGGAGTGTTC
genomic: TTGTATTGGATGAGGCTGATGAAATGCTTTCACGAGGTTTCAAGGATCAGgtctgttcta ... ctgctgtcagATCTATGACATTTTCCAGCTGCTGCCATCTAAAGTCCAGGTTGGAGTGTTC
EST: gi|110726428|gb|EE102211.1|EE102211
EST:     TTGTATTGGATGAGGCTGATGAAATGCTTTCGCGAGGTTTCAAGGATCAG                         ATCTATGACATTTTCCAGCTGCTGCCATCTAAAGTCCAGGTTGGAGTGTTC
genomic: TTGTATTGGATGAGGCTGATGAAATGCTTTCACGAGGTTTCAAGGATCAGgtctgttcta ... ctgctgtcagATCTATGACATTTTCCAGCTGCTGCCATCTAAAGTCCAGGTTGGAGTGTTC
EST: gi|30252762|gb|CB970313.1|CB970313
EST:     TTGTATTGGATGAGGCTGATGAAATGCTTTCACGAGGTTTCAAGGATCAG                         ATCTATGACATTTTCCAGCTGCTGCCATCTAAAGTCCAGGTTGGAGTGTTC
genomic: TTGTATTGGATGAGGCTGATGAAATGCTTTCACGAGGTTTCAAGGATCAGgtctgttcta ... ctgctgtcagATCTATGACATTTTCCAGCTGCTGCCATCTAAAGTCCAGGTTGGAGTGTTC
EST: gi|110387505|gb|EC952176.1|EC952176
EST:     TTGTATTGGATGAGGCTGATGAAATGCTTTCACGAGGTTTCAAGGATCAG                         ATCTATGACATTTTCCAGCTGCTGCCATCTAAAGTCCAGGTTGGAGTGTTC
genomic: TTGTATTGGATGAGGCTGATGAAATGCTTTCACGAGGTTTCAAGGATCAGgtctgttcta ... ctgctgtcagATCTATGACATTTTCCAGCTGCTGCCATCTAAAGTCCAGGTTGGAGTGTTC
EST: gi|30300358|gb|CB977152.1|CB977152
EST:     TTGTATTGGATGAGGCTGATGAAATGCTTTCACGAGGTTTCAAGGATCAG                         ATCTATGACATTTTCCAGCTGCTGCCATCTAAAGTCCAGGTTGGAGTGTTC
genomic: TTGTATTGGATGAGGCTGATGAAATGCTTTCACGAGGTTTCAAGGATCAGgtctgttcta ... ctgctgtcagATCTATGACATTTTCCAGCTGCTGCCATCTAAAGTCCAGGTTGGAGTGTTC
EST: gi|34543158|gb|CF511390.1|CF511390
EST:     TTGTATTGGATGAGGCTGATGAAATGCTTTCACGAGGTTTCAAGGATCAG                         ATCTATGACATTTTCCAGCTGCTGCCATCTAAAGTCCAGGTTGGAGTGTTC
genomic: TTGTATTGGATGAGGCTGATGAAATGCTTTCACGAGGTTTCAAGGATCAGgtctgttcta ... ctgctgtcagATCTATGACATTTTCCAGCTGCTGCCATCTAAAGTCCAGGTTGGAGTGTTC
EST: gi|110686037|gb|EE063279.1|EE063279
EST:     TTGTATTGGATGAGGCTGATGAAATGCTTTCACGAGGTTTCAAGGATCAG                         ATCTATGACATTTTCCAGCTGCTGCCATCTAAAGTCCAGGTTGGAGTGTTC
genomic: TTGTATTGGATGAGGCTGATGAAATGCTTTCACGAGGTTTCAAGGATCAGgtctgttcta ... ctgctgtcagATCTATGACATTTTCCAGCTGCTGCCATCTAAAGTCCAGGTTGGAGTGTTC
EST: gi|71888131|gb|DT037186.1|DT037186
EST:     TTGTATTGGATGAGGCTGATGAAATGCTTTCACGAGGTTTCAAGGATCAG                         ATCTATGACATTTTCCAGCTGCTGCCATCTAAAGTCCAGGTTGGAGTGTTC
genomic: TTGTATTGGATGAGGCTGATGAAATGCTTTCACGAGGTTTCAAGGATCAGgtctgttcta ... ctgctgtcagATCTATGACATTTTCCAGCTGCTGCCATCTAAAGTCCAGGTTGGAGTGTTC
EST: gi|110713238|gb|EE088982.1|EE088982
EST:     TTGTATTGGATGAGGCTGATGAAATGCTTTCGCGAGGTTTCAAGGATCAG                         ATCTATGACATTTTCCAGCTGCTGCCATCTAAAGTCCAGGTTGGAGTGTTC
genomic: TTGTATTGGATGAGGCTGATGAAATGCTTTCACGAGGTTTCAAGGATCAGgtctgttcta ... ctgctgtcagATCTATGACATTTTCCAGCTGCTGCCATCTAAAGTCCAGGTTGGAGTGTTC
EST: gi|110699556|gb|EE076660.1|EE076660
EST:     TTGTATTGGATGAGGCTGATGAAATGCTTTCGCGAGGTTTCAAGGATCAG                         ATCTATGACATTTTTCAGCTGCTGCCATCTAAAGTCCAGGTTGGAGTGTTC
genomic: TTGTATTGGATGAGGCTGATGAAATGCTTTCACGAGGTTTCAAGGATCAGgtctgttcta ... ctgctgtcagATCTATGACATTTTCCAGCTGCTGCCATCTAAAGTCCAGGTTGGAGTGTTC
EST: gi|71855308|gb|DT004363.1|DT004363
EST:     TTGTATTGGATGAGGCTGATGAAATGCTTTCACGAGGTTTCAAGGATCAG                         ATCTATGACATTTTCCAGCTGCTGCCATCTAAAGTCCAGGTTGGAGTGTTC
genomic: TTGTATTGGATGAGGCTGATGAAATGCTTTCACGAGGTTTCAAGGATCAGgtctgttcta ... ctgctgtcagATCTATGACATTTTCCAGCTGCTGCCATCTAAAGTCCAGGTTGGAGTGTTC
EST: gi|110686043|gb|EE063292.1|EE063292
EST:     TTGTATTGGATGAGGCTGATGAAATGCTTTCACGAGGTTTCAAGGATCAG                         ATCTATGACATTTTCCAGCTGCTGCCATCTAAAGTCCAGGTTGGAGTGTTC
genomic: TTGTATTGGATGAGGCTGATGAAATGCTTTCACGAGGTTTCAAGGATCAGgtctgttcta ... ctgctgtcagATCTATGACATTTTCCAGCTGCTGCCATCTAAAGTCCAGGTTGGAGTGTTC
EST: gi|110693079|gb|EE068994.1|EE068994
EST:     TTGTATTGGATGAGGCTGATGAAATGCTTTCACGAGGTTTCAAGGATCAG                         ATCTATGACATTTTCCAGCTGCTGCCATCTAAAGTCCAGGTTGGAGTGTTC
genomic: TTGTATTGGATGAGGCTGATGAAATGCTTTCACGAGGTTTCAAGGATCAGgtctgttcta ... ctgctgtcagATCTATGACATTTTCCAGCTGCTGCCATCTAAAGTCCAGGTTGGAGTGTTC
EST: gi|161712645|gb|FC062217.1|FC062217
EST:     ATTGGATGAGGCTGATGAAATGCTTTCACGAGGTTTCAAGGATCAG                         ATCTATGACATTTTCCAGCTGCTGCCATCTAAAGTCCAGGTTGGAGTGTTC
genomic: ATTGGATGAGGCTGATGAAATGCTTTCACGAGGTTTCAAGGATCAGgtctgttcta ... ctgctgtcagATCTATGACATTTTCCAGCTGCTGCCATCTAAAGTCCAGGTTGGAGTGTTC
EST: gi|32271073|gb|CD720232.1|CD720232
EST:     TTGTATTGGATGAGGCTGATGAAATGCTTTCACGAGGTTTCAAGGATCAG                         ATCTATGACATTTTCCAGCTGCTGCCATCTAAAGTCCAGGTTGGAGTGTTC
genomic: TTGTATTGGATGAGGCTGATGAAATGCTTTCACGAGGTTTCAAGGATCAGgtctgttcta ... ctgctgtcagATCTATGACATTTTCCAGCTGCTGCCATCTAAAGTCCAGGTTGGAGTGTTC
EST: gi|71889743|gb|DT038798.1|DT038798
EST:     TTGTATTGGATGAGGCTGATGAAATGCTTTCACGAGGTTTCAAGGATCAG                         ATCTATGACATTTTCCAGCTGCTGCCATCTAAAGTCCAGGTTGGAGTGTTC
genomic: TTGTATTGGATGAGGCTGATGAAATGCTTTCACGAGGTTTCAAGGATCAGgtctgttcta ... ctgctgtcagATCTATGACATTTTCCAGCTGCTGCCATCTAAAGTCCAGGTTGGAGTGTTC
EST: gi|110393940|gb|EC959533.1|EC959533
EST:     TTGTATTGGATGAGGCTGATGAAATGCTTTCACGAGGTTTCAAGGATCAG                         ATCTATGACATTTTCCAGCTGCTGCCATCTAAAGTCCAGGTTGGAGTGTTC
genomic: TTGTATTGGATGAGGCTGATGAAATGCTTTCACGAGGTTTCAAGGATCAGgtctgttcta ... ctgctgtcagATCTATGACATTTTCCAGCTGCTGCCATCTAAAGTCCAGGTTGGAGTGTTC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttgactggctttgttgtttttctgataattcattaattttttttgctgctgtcagATCTATGACATTTTCCAGCTGCTGCCATCTAAAGTCCAGGTTGGAGTGTTCTCTGCCACAATGCCCCCTGAGGCCCTTGAGATCACTCGAAAGTTCATGA
                              cattaat  putative branch site (score: 3)
                                    ttttttttgctgct  CT-rich tract
         tttgttgtttttctga  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtctgttctattatatctctgtttctttactagttgtaatatttttgcatacttcatggtgaagaacattattttgctaattgttagaagttcatgctcattgcttattgctggatttttcaatatgtgcaagttttgactggctttgttgtttttctgataattcattaattttttttgctgctgtcagATCTATGACATTTTCCAGCTGCTGCCATCTAAAGTCCAGGTTGGAGTGTTCTCTGCCACAATGCCCCCTGAGGCCCTTGAGATCACTCGAAAGTTCATGA

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGATCA