1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtaggtgaccttttatctaaatatttcttatggactttctttgctatatcacccatagcagcattcctatatgcctcattgtcctcttttctttagGGGATATATCTCCTCCTCGTGGAGTGAGGGCAGCTATGGAGATGCAAGCAGAAGCAGAACGTAAAAAGAGAGCTCAAATTCTTGAATCAGAGG
species | Vitis vinifera |
transcript | Vv09s0002g01630.t01 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: CAATGAGGCTGCTAAAGATTGGGGCTTGAAGTGTCTCCGTTATGAAATAA GGGATATATCTCCTCCTCGTGGAGTGAGGGCAGCTATGGAGATGCAAGCAGEST: gi|110393459|gb|EC958711.1|EC958711
genomic: CAATGAGGCTGCTAAAGATTGGGGCTTGAAGTGTCTCCGTTATGAAATAAgtaggtgacc ... ttttctttagGGGATATATCTCCTCCTCGTGGAGTGAGGGCAGCTATGGAGATGCAAGCAG
EST: CAATGAGGCTGCTAAAGATTGGGGCTTGAAGTGTCTCCGTTATGAAATAA GGGATATATCTCCTCCTCGTGGAGTGAGGGCAGCTATGGAGATGCAAGCAGEST: gi|30128611|gb|CB913950.1|CB913950
genomic: CAATGAGGCTGCTAAAGATTGGGGCTTGAAGTGTCTCCGTTATGAAATAAgtaggtgacc ... ttttctttagGGGATATATCTCCTCCTCGTGGAGTGAGGGCAGCTATGGAGATGCAAGCAG
EST: CAATGAGGCTGCTAAAGATTGGGGCTTGAAGTGTCTCCGTTATGAAATAA GGGATATATCTCCTCCTCGTGGAGTGAGGGCAGCTATGGAGATGCAAGCAG
genomic: CAATGAGGCTGCTAAAGATTGGGGCTTGAAGTGTCTCCGTTATGAAATAAgtaggtgacc ... ttttctttagGGGATATATCTCCTCCTCGTGGAGTGAGGGCAGCTATGGAGATGCAAGCAG
tgctatatcacccatagcagcattcctatatgcctcattgtcctcttttctttagGGGATATATCTCCTCCTCGTGGAGTGAGGGCAGCTATGGAGATGCAAGCAGAAGCAGAACGTAAAAAGAGAGCTCAAATTCTTGAATCAGAGG
tgcctcattgtcctct CT-rich tract
ttttcttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaggtgaccttttatctaaatatttcttatggactttctttgctatatcacccatagcagcattcctatatgcctcattgtcctcttttctttagGGGATATATCTCCTCCTCGTGGAGTGAGGGCAGCTATGGAGATGCAAGCAGAAGCAGAACGTAAAAAGAGAGCTCAAATTCTTGAATCAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA