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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaccactgaataatatctgattgaacttgattatgtctgcatgaaaataaggttgtggtgatttctgtttctgtgtctgcatgaaaattgtccaatttagGTTGCAGATTTTGGTTCATTGGAACTCTCACCAGTGGATGGTCAGACGCTGATCGATTTCATGCATACTAGAGGTCTTCGAATGCGTTCTCTGGGACATG

Basic information

species Vitis vinifera
transcript Vv09s0002g01140.t01
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv09s0002g01140.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: LOC_Os07g23990.1 (Oryza sativa), 3'ss of exon 11
gtaaccactgaataatatctgattgaacttgattatgtctgcatgaaaataaggttgtggtgatttctgtttctgtgtctgcatgaaaattgtccaatttagGTTGCAGATTTTGGTTCATTGGAACTCTCACCAGTGGATGGTCAGACGCTGATCGATTTCATGCATACTAGAGGTCTTCGAATGCGTTCTCTGGGACATG
               ||| |||   ||  ||| ||  ||  ||||   ||    ||  | | |      |     |     ||| | |         || |||||||||||||||||||  ||||||| ||||| || ||||||  |||  |||  |||||||||||||| ||||| || |  |||||||| || ||||| |
--------------gtatgtga---aaaatgaataattccccatgtgcatttattttagttaagaagcatagtaattaacccataagat-------gttcagGTTGCAGATTTTGGTTCCCTGGAACTTTCACCTGTTGATGGTAGGACCTTGACAGATTTCATGCATACCAGAGGCCTACAGATGCGTTCCCTTGGACAAG

upper sequence: Vv09s0002g01140.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA16G02770.1 (Glycine max), 3'ss of exon 13
gtaaccactgaataatatctgattgaacttgattatgtctgcatgaaaataaggttgtggtgatttctgtttctgtgtctgcatgaaaattgtccaatttagGTTGCAGATTTTGGTTCATTGGAACTCTCACCAGTGGATGGTCAGACGCTGATCGATTTCATGCATACTAGAGGTCTTCGAATGCGTTCTCTGGGACATG
||||  |  ||||  ||| || ||||   |    | | ||    |  |||| |  | | ||||| | | ||   || |         ||||||  |||  |||| || |||||||| |||||||||||||||||||| ||||| |  || || |  ||||| ||||||||| | ||||| ||||||| |||||| |||||||
gtaaggatggaattttatttggttgattgtttgcaaggcttttggttaatatgacttttgtgatctttattatagtctt--------aattgtggaatacagGTAGCCGATTTTGGCTCATTGGAACTCTCACCAGTTGATGGACGCACTCTAACTGATTTTATGCATACTCGGGGTCTACGAATGCATTCTCTTGGACATG

upper sequence: Vv09s0002g01140.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA07G06160.1 (Glycine max), 3'ss of exon 11
gtaaccactgaataatatctgattgaacttgatt--atgtctgcatgaaaataaggttgtggtgatttctgtttctgtgtctgcatgaaaattgtccaatttagGTTGCAGATTTTGGTTCATTGGAACTCTCACCAGTGGATGGTCAGACGCTGATCGATTTCATGCATACTAGAGGTCTTCGAATGCGTTCTCTGGGACATG
||||  |  ||||  ||| || ||||  ||||||  | | ||    |  |||| |  | ||||||| | | ||   || |         ||||||  |||  |||| || ||||| || |||||||||||||||||||| ||||| |  || || |  ||||| ||||||||| | ||||| |||||||||||||| |||||||
gtaaggatagaatt-tatttggttga--ttgattgcacggcttttggttaatatgactctggtgatctttattgtagtctt--------aattgtggaatacagGTAGCCGATTTCGGCTCATTGGAACTCTCACCAGTTGATGGACGCACTCTAACTGATTTTATGCATACTCGGGGTCTACGAATGCGTTCTCTTGGACATG

upper sequence: Vv09s0002g01140.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: AT1G01320.1 (Arabidopsis thaliana), 3'ss of exon 13
gtaaccactgaataatatctgattgaacttgattatgtctgcatgaaaataaggttgtggtgatttctgtttctgtgtctgcatgaaaattgtccaatttagGTTGCAGATTTTGGTTCATTGGAACTCTCACCAGTGGATGGTCAGACGCTGATCGATTTCATGCATACTAGAGGTCTTCGAATGCGTTCTCTGGGACATG
||||  |       | || |  ||| | |   || | | |   |   | |||  | ||    | |  ||    | |   |  || |         |||  ||||||||||||||||||||||||| ||||| ||||| ||||| | ||| || |  ||||| ||||| || ||||||||||| ||||||||| | ||| |||
gtaa--atgagtctaaattttgttgtagt--gttgtctattggtagtattaaaatagtaacaaatcatgcgaattttcttttatcacgg------aatgcagGTTGCAGATTTTGGTTCATTGGAGCTCTCCCCAGTCGATGGCCGGACTCTAACTGATTTTATGCACACAAGAGGTCTTCGGATGCGTTCTTTAGGATATG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aataaggttgtggtgatttctgtttctgtgtctgcatgaaaattgtccaatttagGTTGCAGATTTTGGTTCATTGGAACTCTCACCAGTGGATGGTCAGACGCTGATCGATTTCATGCATACTAGAGGTCTTCGAATGCGTTCTCTGGGACATG
                                   atgaaaatt  TA-rich tract