1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...tcctcctgttcatagatatttttgatatgttaagtttcttgtttagtacttatttagcatatcctgtgtaataaaattctttctaatttcaatgttgcagAGGTCAGTCAGATGTCCAGCCGGTTGACATCAGAATCTCGCATATATGCTGATAAGGCAAGAGATCTAAATCGACAG
species | Vitis vinifera |
transcript | Vv09s0002g00780.t01 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: AATGACTCGCAATGTGCAGGAAGTACTGGGAGTTGGTGAAAAGTTAGATC AGGTCAGTCAGATGTCCAGCCGGTTGACATCAGAATCTCGCATATATGCTGEST: gi|110422751|gb|EC989081.1|EC989081
genomic: AATGACTCGCAATGTGCAGGAAGTACTGGGAGTTGGTGAAAAGTTAGATCgtaagttgct ... aatgttgcagAGGTCAGTCAGATGTCCAGCCGGTTGACATCAGAATCTCGCATATATGCTG
EST: AATGACTCGCAATGTGCAGGAAGTACTGGGAGTTGGTGAAAAGTTAGATC AGGTCAGTCAGATGTCCAGCCGGTTGACATCAGAATCTCGCATATATGCTGEST: gi|22014059|gb|BQ799093.1|BQ799093
genomic: AATGACTCGCAATGTGCAGGAAGTACTGGGAGTTGGTGAAAAGTTAGATCgtaagttgct ... aatgttgcagAGGTCAGTCAGATGTCCAGCCGGTTGACATCAGAATCTCGCATATATGCTG
EST: AATGACTCGCAATGTGCAGGAAGTACTGGGAGTTGGTGAAAAGTTAGATC AGGTCAGTCAGATGTCCAGCCGGTTGACATCAGAATCTCGCATATATGCTGEST: gi|110385690|gb|EC950236.1|EC950236
genomic: AATGACTCGCAATGTGCAGGAAGTACTGGGAGTTGGTGAAAAGTTAGATCgtaagttgct ... aatgttgcagAGGTCAGTCAGATGTCCAGCCGGTTGACATCAGAATCTCGCATATATGCTG
EST: AATGACTCGCAATGTGCAGGAAGTACTGGGAGTTGGTGAAAAGTTAGATC AGGTCAGTCAGATGTCCAGCCGGTTGACATCAGAATCTCGCATATATGCTGEST: gi|110722089|gb|EE098012.1|EE098012
genomic: AATGACTCGCAATGTGCAGGAAGTACTGGGAGTTGGTGAAAAGTTAGATCgtaagttgct ... aatgttgcagAGGTCAGTCAGATGTCCAGCCGGTTGACATCAGAATCTCGCATATATGCTG
EST: AATGACTCGCAATGTGCAGGAAGTACTGGGAGTTGGTGAAAAGTTAGATC AGGTCAGTCAGATGTCCAGCCGGTTGACATCAGAATCTCGCATATATGCTGEST: gi|77586405|gb|DV222323.1|DV222323
genomic: AATGACTCGCAATGTGCAGGAAGTACTGGGAGTTGGTGAAAAGTTAGATCgtaagttgct ... aatgttgcagAGGTCAGTCAGATGTCCAGCCGGTTGACATCAGAATCTCGCATATATGCTG
EST: AATGACTCGCAATGTGCAGGAAGTACTGGGAGTTGGTGAAAAGTTAGATC AGGTCAGTCAGATGTCCAGCCGGTTGACATCAGAATCTCGCATATATGCTGEST: gi|110374781|gb|EC939712.1|EC939712
genomic: AATGACTCGCAATGTGCAGGAAGTACTGGGAGTTGGTGAAAAGTTAGATCgtaagttgct ... aatgttgcagAGGTCAGTCAGATGTCCAGCCGGTTGACATCAGAATCTCGCATATATGCTG
EST: AATGACTCGCAATGTGCAGGAAGTACTGGGAGTTGGTGAAAAGTTAGATC AGGTCAGTCAGATGTCCAGCCGGTTGACATCAGAATCTCGCATATATGCTG
genomic: AATGACTCGCAATGTGCAGGAAGTACTGGGAGTTGGTGAAAAGTTAGATCgtaagttgct ... aatgttgcagAGGTCAGTCAGATGTCCAGCCGGTTGACATCAGAATCTCGCATATATGCTG
gtacttatttagcatatcctgtgtaataaaattctttctaatttcaatgttgcagAGGTCAGTCAGATGTCCAGCCGGTTGACATCAGAATCTCGCATATATGCTGATAAGGCAAGAGATCTAAATCGACAG
ttctaat putative branch site (score: 2)
taataaaattctttct TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tcctcctgttcatagatatttttgatatgttaagtttcttgtttagtacttatttagcatatcctgtgtaataaaattctttctaatttcaatgttgcagAGGTCAGTCAGATGTCCAGCCGGTTGACATCAGAATCTCGCATATATGCTGATAAGGCAAGAGATCTAAATCGACAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC
tcctcct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -catatcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aataaaa