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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgcttcaaatctgaaaatctttcttgttcttttgtttattattcctatttaatttataatgacttccattatataattcgtatatatgcagAAATCTTGCTGGTAATGGCTTCAATGGGGGCATTCCTTATTCTATTTCTCTGATGATTTCTCTTAAATACCT

Basic information

species Vitis vinifera
transcript Vv09s0002g00150.t01
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110710968|gb|EE087633.1|EE087633
EST:     AATCTTGGAAACCAGATACCTTATCAACTCCCTCCAAACCTGCAACGATT                         AAATCTTGCTGGTAATGGCTTCAATGGGGGCATTCCTTATTCTATTTCTCT
genomic: AATCTTGGAAACCAGATACCTTATCAACTCCCTCCAAACCTGCAACGATTgtatgcttca ... atatatgcagAAATCTTGCTGGTAATGGCTTCAATGGGGGCATTCCTTATTCTATTTCTCT
EST: gi|110712955|gb|EE088453.1|EE088453
EST:     AATCTTGGAAACCAGATACCTTATCAACTCCCTCCAAACCTGCAACGATT                         AAATCTTGCTGGTAATGGCTTCAATGGGGGCATTCCTTATTCTATTTCTCT
genomic: AATCTTGGAAACCAGATACCTTATCAACTCCCTCCAAACCTGCAACGATTgtatgcttca ... atatatgcagAAATCTTGCTGGTAATGGCTTCAATGGGGGCATTCCTTATTCTATTTCTCT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tattattcctatttaatttataatgacttccattatataattcgtatatatgcagAAATCTTGCTGGTAATGGCTTCAATGGGGGCATTCCTTATTCTATTTCTCTGATGATTTCTCTTAAATACCT
          atttaat  putative branch site (score: 4)
         tatttaatttataatg  TA-rich tract