Sequence
atgc intronic sequence ATGC exonic sequence...atttatttggatgtactatggctgattacaaaattttattctgtgttgtcatctaacaatgataaacatgtctaaaagtgttatgtttgctatgttacagGATTCACCAATGCGCGTACCAGCTGAGCAGTTTCTTACCCTAAGGGCCTTTGGTGCTCCACCAATTGTAATTGCACTTGCTGCACAAGGAACTTTTCGTG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv08s0058g00510.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GRMZM5G890665_T02 (Zea mays), 3'ss of exon 3
--atttatttggatgtactatggctgattacaaaattttattctgtgttgtcatctaacaatgataaacatgtctaaaagtgttatgtttgctat-gttacagGATTCACCAATGCGCGTACCAGCTGAGCAGTTTCTTACCCTAAGGGCCTTTGGTGCTCCACCAATTGTAATTGCACTTGCTGCACAAGGAACTTTTCGTG
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attcttaatgacagcttctctgattaattccctatactcttgcagttttcttttaaaacattttttgctgaa---aaagtttttctctttactgtcaacacagGATTCACCAATGCGAGCACCAGCAGAACAGTTTCTTACACTGAGGGCACTTGGTGCTCCACCGATCATAGTGGCACTTGCAGCTCAGGGTGCATTTCGTG
upper sequence: Vv08s0058g00510.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA07G19210.1 (Glycine max), 3'ss of exon 5
-atttatttggatgtactatggctgattacaaaattttattctgtgttgtcatctaacaatgataaacatgtctaaaagtgttatgtttgctatgt----tacagGATTCACCAATGCGCGTACCAGCTGAGCAGTTTCTTACCCTAAGGGCCTTTGGTGCTCCACCAATTGTAATTGCACTTGCTGCACAAGGAACTTTTCGTG
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agcatttttggcttgtcttca--tgggtacttggttttat---ataattggattttacttgtataaatttgtatacatcatttattccgtttatatgctgtttagGATTCTCCGATGCGTGGACCTGCTGAGCAGTTTCTTACATTGAGGGCCTTTGGTGCTCCAGCAATTGTGCTCGCATTAGCTGCACAAGGCACCTTTCGTG
upper sequence: Vv08s0058g00510.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA18G43740.1 (Glycine max), 3'ss of exon 5
atttatttggatgtactatggctgattacaaaattttattctgtgttgtcatctaacaatgataaacatgtctaaaagtgttat---gtttgctatgttacagGATTCACCAATGCGCGTACCAGCTGAGCAGTTTCTTACCCTAAGGGCCTTTGGTGCTCCACCAATTGTAATTGCACTTGCTGCACAAGGAACTTTTCGTG
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aaacacttttggcttctcttcatgggtacttggttttat---ataattggattttacttgtataatcttgtttacatcacttattccatttatagctgtttagGATTCTCCGATGCGTGGACCTGCTGAGCAGTTTCTTACATTGAGGGCCTTTGGCACTCCAGCAATTGTGCTCGCATTAGCTGCGCAAGGCACCTTTCGTG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ttgtcatctaacaatgataaacatgtctaaaagtgttatgtttgctatgttacagGATTCACCAATGCGCGTACCAGCTGAGCAGTTTCTTACCCTAAGGGCCTTTGGTGCTCCACCAATTGTAATTGCACTTGCTGCACAAGGAACTTTTCGTG
aatgataaa TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
atttatttggatgtactatggctgattacaaaattttattctgtgttgtcatctaacaatgataaacatgtctaaaagtgttatgtttgctatgttacagGATTCACCAATGCGCGTACCAGCTGAGCAGTTTCTTACCCTAAGGGCCTTTGGTGCTCCACCAATTGTAATTGCACTTGCTGCACAAGGAACTTTTCGTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - -tggatgt
- - - - - - - - - tggctga
- - - - - - - - - - - - - -acaaaat
- - - - - - - - - - - - - - - - - - - - - -tgttgtc
- - - - - - - - - - - - - - - - - - - - - - - - - - ctaacaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gataaac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaaagtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgtttgc