Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...acatcctgctttgctgatagaatctctctactaaaaacacttgaactcctcattctggttgttggcactgtttcttctaattttgttatctgtttaccagATGTTGTATCCATTCCCAAGACAAATGAGAACTTCCGTCTCCTATATGACACAAAGGGCCGATTCAGACTCCACTCAATTAGGGATGAGGAGGCAAAG

Basic information

species Vitis vinifera
transcript Vv08s0058g00390.t01
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv08s0058g00390.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA16G23730.1 (Glycine max), 3'ss of exon 3
--------acatcctgctttgctgatagaatctctctactaaaaacacttgaactcctcattctggttgttggcactgtttcttctaattttgttatctgtttaccagATGTTGTATCCATTCCCAAGACAAATGAGAACTTCCGTCTCCTATATGACACAAAGGGCCGATTCAGACTCCACTCAATTAGGGATGAGGAGGCAAAG
        | |   |    | ||  |  |   | |||| | |     |||  |  | | ||| |  || |      | ||| | ||||  || | || | ||||  |||||||||||| || || || ||||||||||||||||| || || |||||||| || || |||||| | ||||||||| | |||||||| ||||| |||
ttagcacaatactttatgattctagtctacaatatctattgatt-tgctttgaggcatgatttttcttct----gttattt-tactaaaattat-atttttttat-agATGTTGTATCAATCCCTAAAACAAATGAGAACTTCCGCCTGCTGTATGACACCAAAGGTCGATTCCGTCTCCACTCAGTCAGGGATGACGAGGCTAAG

upper sequence: Vv08s0058g00390.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA14G06170.1 (Glycine max), 3'ss of exon 3
-acatcctgctttgctgatagaatctctctactaaaaacacttgaactcctcattctggttgttggcactgtttcttctaattttgttatctgtttaccagATGTTGTATCCATTCCCAAGACAAATGAGAACTTCCGTCTCCTATATGACACAAAGGGCCGATTCAGACTCCACTCAATTAGGGATGAGGAGGCAAAG
  |   || |   ||  | |  | || |   ||      |  ||      | ||| |  |  ||      |     |    | || |||||| | ||| ||||||||| || || || || ||||||||||||||||| || || |||||||| || ||||||||| | || || || || |||||||| |||||||||
ggctctctcccccgccaaaaacaccttttgtctgtcccaatatggttctataattatattgatttagctcgaggaatgatttctttttatctctatac-agATGTTGTTTCAATCCCAAAAACAAATGAGAACTTCCGCCTGCTCTATGACACTAAAGGCCGATTCCGTCTTCATTCCATCAGGGATGATGAGGCAAAG

upper sequence: Vv08s0058g00390.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA02G05370.1 (Glycine max), 3'ss of exon 3
acatcctgctttgctgatagaatctctctactaaaaacacttgaactcctcattctggttgttggcactgtttcttctaattttgt----tatctgtttaccagATGTTGTATCCATTCCCAAGACAAATGAGAACTTCCGTCTCCTATATGACACAAAGGGCCGATTCAGACTCCACTCAATTAGGGATGAGGAGGCAAAG
   | | ||        | |  | |||   || | ||    | |     |   | ||     ||    |  ||||  |  |||  |    ||| | |||   |||||||||||| || || || ||||||||||||||||| || || |||||||| || ||||||||| | || |||||| | |  ||||| ||||| |||
---ttcagcgcaataattcgtgtttctagtcttacaatttct-attgatttgctgtgaggcatgatttttcttctgttgttttactaaaatattttttttgtagATGTTGTATCAATCCCTAAAACAAATGAGAACTTCCGCCTGCTGTATGACACCAAAGGCCGATTCCGTCTTCACTCAGTCATAGATGACGAGGCTAAG

upper sequence: Vv08s0058g00390.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA02G43080.2 (Glycine max), 3'ss of exon 3
acatcctgct-ttgctgatagaatctc-tcta-ctaaaaacacttgaactcctcattctggttgttggcactgtttcttct-aattttgttatctgtttaccagATGTTGTATCCATTCCCAAGACAAATGAGAACTTCCGTCTCCTATATGACACAAAGGGCCGATTCAGACTCCACTCAATTAGGGATGAGGAGGCAAAG
    ||| |     |  | ||||  |  |||  |  || | |  ||      |   | ||||||   | |   |||||| |  |  || |||||| || || ||||||||| || || || || || |||||||||||||| || || |||||||| || ||||||||| | ||||| ||  | |||||||| |||||||||
---ccctaccaccaccaaaagaactttgtctgtcccaatatatatgtttctattgatttggttggatgaatgatttctttttgaaatttttatcttttcac-agATGTTGTTTCAATCCCAAAAACCAATGAGAACTTCCGCCTGCTCTATGACACTAAAGGCCGATTCCGTCTCCATTCTGTCAGGGATGATGAGGCAAAG

upper sequence: Vv08s0058g00390.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: PP1S39_422V6.2 (Physcomitrella patens), 3'ss of exon 3
acatcctgctttgctgata-gaatctctctactaaaaacacttga-actcctcattctggttgttggc-actgtttcttctaattttgttatctgtttaccagATGTTGTATCCATTCCCAAGACAAATGAGAACTTCCGTCTCCTATATGACACAAAGGGCCGATTCAGACTCCACTCAATTAGGGATGAGGAGGCAAAG
   ||  |  |   | | | ||  ||   |  |  |   || |   |   ||| ||||  ||  | |  | || || |  |  || | ||| |  |||  |||||||  |||||||| |||||||||| |||||||||||| |  | |||||||  || || || ||||  || |||   || || |  |||||||| |||
-tgtcaagtgtatttaacaagaggcttattgttgtagtgacctatcaacgctcgttctactttcttgtgagtgattttctt--ttgttttacccttttgtcagATGTGATATCCATTGCCAAGACAAACGAGAACTTCCGTTTGTTGTATGACAACAAAGGTCGTTTCACCCTGCACAACATCAGTGCGGAGGAGGCGAAG

upper sequence: Vv08s0058g00390.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: EFJ14824 (Selaginella moellendorffii), 3'ss of exon 3
acatcctgctttgctgatagaatctctctactaaaaacacttgaactcctcattctggttgttggcactgtttcttctaattttgttatctgtttaccagATGTTGTATCCATTCCCAAGACAAATGAGAACTTCCGTCTCCTATATGACACAAAGGGCCGATTCAGACTCCACTCAATTAGGGATGAGGAGGCAAAG
                                  ||   || ||  || |        ||    | ||||  | | ||  ||| |       ||| | ||||||  |  |  |   ||||    ||||||||| ||||||||| |||||||  |||||||||||||   | ||||| || |     |||||||| |||
--------------------------------gtaagttctcgatttcttttcctctcttacccg-actgact-tgcttgtttcgc------ttttctagATGTGTTGACGGTCGGCAAGGTGGATGAGAACTACCGTCTCCTCTATGACAGCAAGGGCCGATTCACCTTGCACTCGATCAACTCCGAGGAGGCCAAG

upper sequence: Vv08s0058g00390.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: EFJ26570 (Selaginella moellendorffii), 3'ss of exon 3
acatcctgctttgctgatagaatctctctactaaaaacacttgaactcctcattctggttgttggcactgtttcttctaattttgttatctg--tttaccagATGTTGTATCCATTCCCAAGACAAATGAGAACTTCCGTCTCCTATATGACACAAAGGGCCGATTCAGACTCCACTCAATTAGGGATGAGGAGGCAAAG
                                         | |  ||   ||| |  || |   | ||    |  || | ||  || | |   ||| | ||||||  |  |  |   ||||    ||||||||| ||||||||| |||||||  |||||||||||||   | ||||| || |  |  |||||||| |||
----------------------------------------gtaagttctcgatttt--ttttcctctcttacccgactgacttgcttgtttcgcttttctagATGTGTTGACGGTCGGCAAGGTGGATGAGAACTACCGTCTCCTCTATGACAGCAAGGGCCGATTCACCTTGCACTCGATCAACGCCGAGGAGGCCAAG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110701499|gb|EE079143.1|EE079143
EST:     TGTTGATGGGAAGGTTAGGACAGACAAGACATACCCTTCTGGTTTCATGG                         ATGTTGTATCCATTCCCAAGACAAATGAGAACTTCCGTCTCCTATATGACA
genomic: TGTTGATGGGAAGGTTAGGACAGACAAGACATACCCTTCTGGTTTCATGGgtaagagtgg ... tgtttaccagATGTTGTATCCATTCCCAAGACAAATGAGAACTTCCGTCTCCTATATGACA
EST: gi|110429081|gb|EC995569.1|EC995569
EST:     TGTTGATGGGAAGGTTAGGACAGATAAGACATACCCTTCTGGTTTCATGG                         ATGTTGTATCCATTCCCAAGACAAATGAGAACTTCCGTCTCCTATATGACA
genomic: TGTTGATGGGAAGGTTAGGACAGACAAGACATACCCTTCTGGTTTCATGGgtaagagtgg ... tgtttaccagATGTTGTATCCATTCCCAAGACAAATGAGAACTTCCGTCTCCTATATGACA
EST: gi|110383286|gb|EC947651.1|EC947651
EST:     TGTTGATGGGAAGGTTAGGACAGACAAGACATACCCTTCTGGTTTCATGG                         ATGTTGTATCCATTCCCAAGACAAATGAGAACTTCCGTCTCCTATATGACA
genomic: TGTTGATGGGAAGGTTAGGACAGACAAGACATACCCTTCTGGTTTCATGGgtaagagtgg ... tgtttaccagATGTTGTATCCATTCCCAAGACAAATGAGAACTTCCGTCTCCTATATGACA
EST: gi|110387389|gb|EC952050.1|EC952050
EST:     TGTTGATGGGAAGGTTAGGACAGACAAGACATACCCTTCTGGTTTCATGG                         ATGTTGTATCCATTCCCAAGACAAATGAGAACTTCCGTCTCCTATATGACA
genomic: TGTTGATGGGAAGGTTAGGACAGACAAGACATACCCTTCTGGTTTCATGGgtaagagtgg ... tgtttaccagATGTTGTATCCATTCCCAAGACAAATGAGAACTTCCGTCTCCTATATGACA
EST: gi|110380109|gb|EC945352.1|EC945352
EST:     TGTTGATGGGAAGGTTAGGACAGACAAGACATACCCTTCTGGTTTCATGG                         ATGTTGTATCCATTCCCAAGACAAATGAGAACTTCCGTCTCCTATATGACA
genomic: TGTTGATGGGAAGGTTAGGACAGACAAGACATACCCTTCTGGTTTCATGGgtaagagtgg ... tgtttaccagATGTTGTATCCATTCCCAAGACAAATGAGAACTTCCGTCTCCTATATGACA
EST: gi|110727191|gb|EE103670.1|EE103670
EST:     TGTTGATGGGAAGGTTAGGACAGATAAGACATACCCTTCTGGTTTCATGG                         ATGTTGTATCCATTCCCAAGACAAATGAGAACTTCCGTCTCCTATATGACA
genomic: TGTTGATGGGAAGGTTAGGACAGACAAGACATACCCTTCTGGTTTCATGGgtaagagtgg ... tgtttaccagATGTTGTATCCATTCCCAAGACAAATGAGAACTTCCGTCTCCTATATGACA
EST: gi|161714436|gb|FC064435.1|FC064435
EST:     TGTTGATGGGAAGGTTAGGACAGACAAGACATACCCTTCTGGTTTCATGG                         ATGTTGTATCCATTCCCAAGACAAATGAGAACTTCCGTCTCCTATATGACA
genomic: TGTTGATGGGAAGGTTAGGACAGACAAGACATACCCTTCTGGTTTCATGGgtaagagtgg ... tgtttaccagATGTTGTATCCATTCCCAAGACAAATGAGAACTTCCGTCTCCTATATGACA
EST: gi|110378441|gb|EC943573.1|EC943573
EST:     TGTTGATGGGAAGGTTAGGACAGATAAGACATACCCTTCTGGTTTCATGG                         ATGTTGTATCCATTCCCAAGACAAATGAGAACTTCCGTCTCCTATATGACA
genomic: TGTTGATGGGAAGGTTAGGACAGACAAGACATACCCTTCTGGTTTCATGGgtaagagtgg ... tgtttaccagATGTTGTATCCATTCCCAAGACAAATGAGAACTTCCGTCTCCTATATGACA
EST: gi|349830589|gb|FQ416887.1|FQ416887
EST:     TGTTGATGGGAAGGTTAGGACAGACAAGACATACCCTTCTGGTTTCATGG                         ATGTTGTATCCATTCCCAAGACAAATGAGAACTTCCGTCTCCTATATGACA
genomic: TGTTGATGGGAAGGTTAGGACAGACAAGACATACCCTTCTGGTTTCATGGgtaagagtgg ... tgtttaccagATGTTGTATCCATTCCCAAGACAAATGAGAACTTCCGTCTCCTATATGACA
EST: gi|110364287|gb|EC923785.1|EC923785
EST:     TGTTGATGGGAAGGTTAGGACAGACAAGACATACCCTTCTGGTTTCATGG                         ATGTTGTATCCATTCCCAAGACAAATGAGAACTTCCGTCTCCTATATGACA
genomic: TGTTGATGGGAAGGTTAGGACAGACAAGACATACCCTTCTGGTTTCATGGgtaagagtgg ... tgtttaccagATGTTGTATCCATTCCCAAGACAAATGAGAACTTCCGTCTCCTATATGACA
EST: gi|37188096|gb|CF607447.1|CF607447
EST:     TGTTGATGGGAAGGTTAGGACAGACAAGACATACCCTTCTGGTTTCATGG                         ATGTTGTATCCATTCCCAAGACAAATGAGAACTTCCGTCTCCTATATGACA
genomic: TGTTGATGGGAAGGTTAGGACAGACAAGACATACCCTTCTGGTTTCATGGgtaagagtgg ... tgtttaccagATGTTGTATCCATTCCCAAGACAAATGAGAACTTCCGTCTCCTATATGACA
EST: gi|110377925|gb|EC943028.1|EC943028
EST:     TGTTGATGGGAAGGTTAGGACAGACAAGACATACCCTTCTGGTTTCATGG                         ATGTTGTATCCATTCCCAAGACAAATGAGAACTTCCGTCTCCTATATGACA
genomic: TGTTGATGGGAAGGTTAGGACAGACAAGACATACCCTTCTGGTTTCATGGgtaagagtgg ... tgtttaccagATGTTGTATCCATTCCCAAGACAAATGAGAACTTCCGTCTCCTATATGACA
EST: gi|110409306|gb|EC974966.1|EC974966
EST:     TGTTGATGGGAAGGTTAGGACAGATAAGACATACCCTTCTGGTTTCATGG                         ATGTTGTATCCATTCCCAAGACAAATGAGAACTTCCGTCTCCTATATGACA
genomic: TGTTGATGGGAAGGTTAGGACAGACAAGACATACCCTTCTGGTTTCATGGgtaagagtgg ... tgtttaccagATGTTGTATCCATTCCCAAGACAAATGAGAACTTCCGTCTCCTATATGACA
EST: gi|161714548|gb|FC063544.1|FC063544
EST:     TGTTGATGGGAAGGTTAGGACAGATAAGACATACCCTTCTGGTTTCATGG                         ATGTTGTATCCATTCCCAAGACAAATGAGAACTTCCGTCTCCTATATGACA
genomic: TGTTGATGGGAAGGTTAGGACAGACAAGACATACCCTTCTGGTTTCATGGgtaagagtgg ... tgtttaccagATGTTGTATCCATTCCCAAGACAAATGAGAACTTCCGTCTCCTATATGACA
EST: gi|161719924|gb|FC065787.1|FC065787
EST:     TGTTGATGGGAAGGTTAGGACAGATAAGACATACCCTTCTGGTTTCATGG                         ATGTTGTATCCATTCCCAAGACAAATGAGAACTTCCGTCTCCTATATGACA
genomic: TGTTGATGGGAAGGTTAGGACAGACAAGACATACCCTTCTGGTTTCATGGgtaagagtgg ... tgtttaccagATGTTGTATCCATTCCCAAGACAAATGAGAACTTCCGTCTCCTATATGACA
EST: gi|351017691|gb|FQ436044.1|FQ436044
EST:     TGTTGATGGGAAGGTTAGGACAGACAAGACATACCCTTCTGGTTTCATGG                         ATGTTGTATCCATTCCCAAGACAAATGAGAACTTCCGTCTCCTATATGACA
genomic: TGTTGATGGGAAGGTTAGGACAGACAAGACATACCCTTCTGGTTTCATGGgtaagagtgg ... tgtttaccagATGTTGTATCCATTCCCAAGACAAATGAGAACTTCCGTCTCCTATATGACA
EST: gi|37184024|gb|CF603378.1|CF603378
EST:     TGTTGATGGGAAGGTTAGGACAGACAAGACATACCCTTCTGGTTTCATGG                         ATGTTGTATCCATTCCCAAGACAAATGAGAACTTCCGTCTCCTATATGACA
genomic: TGTTGATGGGAAGGTTAGGACAGACAAGACATACCCTTCTGGTTTCATGGgtaagagtgg ... tgtttaccagATGTTGTATCCATTCCCAAGACAAATGAGAACTTCCGTCTCCTATATGACA
EST: gi|352795435|gb|FQ476550.1|FQ476550
EST:     TGTTGATGGGAAGGTTAGGACAGACAAGACATACCCTTCTGGTTTCATGG                         ATGTTGTATCCATTCCCAAGACAAATGAGAACTTCCGTCTCCTATATGACA
genomic: TGTTGATGGGAAGGTTAGGACAGACAAGACATACCCTTCTGGTTTCATGGgtaagagtgg ... tgtttaccagATGTTGTATCCATTCCCAAGACAAATGAGAACTTCCGTCTCCTATATGACA
EST: gi|110688704|gb|EE067560.1|EE067560
EST:     TGTTGATGGGAAGGTTAGGACAGATAAGACATACCCTTCTGGTTTCATGG                         ATGTTGTATCCATTCCCAAGACAAATGAGAACTTCCGTCTCCTATATGACA
genomic: TGTTGATGGGAAGGTTAGGACAGACAAGACATACCCTTCTGGTTTCATGGgtaagagtgg ... tgtttaccagATGTTGTATCCATTCCCAAGACAAATGAGAACTTCCGTCTCCTATATGACA
EST: gi|110701825|gb|EE079837.1|EE079837
EST:     TGTTGATGGGAAGGTTAGGACAGACAAGACATACCCTTCTGGTTTCATGG                         ATGTTGTATCCATTCCCAAGACAAATGAGAACTTCCGTCTCCTATATGACA
genomic: TGTTGATGGGAAGGTTAGGACAGACAAGACATACCCTTCTGGTTTCATGGgtaagagtgg ... tgtttaccagATGTTGTATCCATTCCCAAGACAAATGAGAACTTCCGTCTCCTATATGACA
EST: gi|110374495|gb|EC939285.1|EC939285
EST:     TGTTGATGGGAAGGTTAGGACAGACAAGACATACCCTTCTGGTTTCATGG                         ATGTTGTATCCATTCCCAAGACAAATGAGAACTTCCGTCTCCTATATGACA
genomic: TGTTGATGGGAAGGTTAGGACAGACAAGACATACCCTTCTGGTTTCATGGgtaagagtgg ... tgtttaccagATGTTGTATCCATTCCCAAGACAAATGAGAACTTCCGTCTCCTATATGACA
EST: gi|110698624|gb|EE076338.1|EE076338
EST:     TGTTGATGGGAAGGTTAGGACAGATAAGACATACCCTTCTGGTTTCATGG                         ATGTTGTATCCATTCCCAAGACAAATGAGAACTTCCGTCTCCTATATGACA
genomic: TGTTGATGGGAAGGTTAGGACAGACAAGACATACCCTTCTGGTTTCATGGgtaagagtgg ... tgtttaccagATGTTGTATCCATTCCCAAGACAAATGAGAACTTCCGTCTCCTATATGACA
EST: gi|110710513|gb|EE086912.1|EE086912
EST:     TGTTGATGGGAAGGTTAGGACAGACAAGACATACCCTTCTGGTTTCATGG                         ATGTTGTATCCATTCCCAAGACAAATGAGAACTTCCGTCTCCTATATGACA
genomic: TGTTGATGGGAAGGTTAGGACAGACAAGACATACCCTTCTGGTTTCATGGgtaagagtgg ... tgtttaccagATGTTGTATCCATTCCCAAGACAAATGAGAACTTCCGTCTCCTATATGACA
EST: gi|71868661|gb|DT017716.1|DT017716
EST:     TGTTGATGGGAAGGTTAGGACAGACAAGACATACCCTTCTGGTTTCATGG                         ATGTTGTATCCATTCCCAAGACAAATGAGAACTTCCGTCTCCTATATGACA
genomic: TGTTGATGGGAAGGTTAGGACAGACAAGACATACCCTTCTGGTTTCATGGgtaagagtgg ... tgtttaccagATGTTGTATCCATTCCCAAGACAAATGAGAACTTCCGTCTCCTATATGACA
EST: gi|110388553|gb|EC953316.1|EC953316
EST:     CATACCCTTCTGGTTTCATGG                         ATGTTGTATCCATTCCCAAGACAAATGAGAACTTCCGTCTCCTATATGACA
genomic: CATACCCTTCTGGTTTCATGGgtaagagtgg ... tgtttaccagATGTTGTATCCATTCCCAAGACAAATGAGAACTTCCGTCTCCTATATGACA
EST: gi|351034241|gb|FQ448038.1|FQ448038
EST:     TGTTGATGGGAAGGTTAGGACAGACAAGACATACCCTTCTGGTTTCATGG                         ATGTTGTATCCATTCCCAAGACAAATGAGAACTTCCGTCTCCTATATGACA
genomic: TGTTGATGGGAAGGTTAGGACAGACAAGACATACCCTTCTGGTTTCATGGgtaagagtgg ... tgtttaccagATGTTGTATCCATTCCCAAGACAAATGAGAACTTCCGTCTCCTATATGACA
EST: gi|110690211|gb|EE067114.1|EE067114
EST:     TGTTGATGGGAAGGTTAGGACAGACAAGACATACCCTTCTGGTTTCATGG                         ATGTTGTATCCATTCCCAAGACAAATGAGAACTTCCGTCTCCTATATGACA
genomic: TGTTGATGGGAAGGTTAGGACAGACAAGACATACCCTTCTGGTTTCATGGgtaagagtgg ... tgtttaccagATGTTGTATCCATTCCCAAGACAAATGAGAACTTCCGTCTCCTATATGACA
EST: gi|161717451|gb|FC069225.1|FC069225
EST:     TGTTGATGGGAAGGTTAGGACAGACAAGACATACCCTTCTGGTTTCATGG                         ATGTTGTATCCATTCCCAAGACAAATGAGAACTTCCGTCTCCTATATGACA
genomic: TGTTGATGGGAAGGTTAGGACAGACAAGACATACCCTTCTGGTTTCATGGgtaagagtgg ... tgtttaccagATGTTGTATCCATTCCCAAGACAAATGAGAACTTCCGTCTCCTATATGACA
EST: gi|33405551|gb|CF211178.1|CF211178
EST:     TGTTGATGGGAAGGTTAGGACAGATAAGACATACCCTTCTGGTTTCATGG                         ATGTTGTATCCATTCCCAAGACAAATGAGAACTTCCGTCTCCTATATGACA
genomic: TGTTGATGGGAAGGTTAGGACAGACAAGACATACCCTTCTGGTTTCATGGgtaagagtgg ... tgtttaccagATGTTGTATCCATTCCCAAGACAAATGAGAACTTCCGTCTCCTATATGACA
EST: gi|33408549|gb|CF214176.1|CF214176
EST:     ATTTGATGGGAAGGTTAGGACAGACAAGACATACCCTTCTGGTTTCATGG                         ATGTTGTATCCATTCCCAAGACAAATGAGAACTTCCGTCTCCTATATGACA
genomic: --TTGATGGGAAGGTTAGGACAGACAAGACATACCCTTCTGGTTTCATGGgtaagagtgg ... tgtttaccagATGTTGTATCCATTCCCAAGACAAATGAGAACTTCCGTCTCCTATATGACA
EST: gi|351018729|gb|FQ425631.1|FQ425631
EST:     TGTTGATGGGAAGGTTAGGACAGACAAGACATACCCTTCTGGTTTCATGG                         ATGTTGTATCCATTCCCAAGACAAATGAGAACTTCCGTCTCCTATATGACA
genomic: TGTTGATGGGAAGGTTAGGACAGACAAGACATACCCTTCTGGTTTCATGGgtaagagtgg ... tgtttaccagATGTTGTATCCATTCCCAAGACAAATGAGAACTTCCGTCTCCTATATGACA
EST: gi|110369231|gb|EC933385.1|EC933385
EST:     TGTTGATGGGAAGGTTAGGACAGATAAGACATACCCTTCTGGTTTCATGG                         ATGTTGTATCCATTCCCAAGACAAATGAGAACTTCCGTCTCCTATATGACA
genomic: TGTTGATGGGAAGGTTAGGACAGACAAGACATACCCTTCTGGTTTCATGGgtaagagtgg ... tgtttaccagATGTTGTATCCATTCCCAAGACAAATGAGAACTTCCGTCTCCTATATGACA
EST: gi|161718530|gb|FC065367.1|FC065367
EST:     TGTTGATGGGAAGGTTAGGACAGACAAGACATACCCTTCTGGTTTCATGG                         ATGTTGTATCCATTCCCAAGACAAATGAGAACTTCCGTCTCCTATATGACA
genomic: TGTTGATGGGAAGGTTAGGACAGACAAGACATACCCTTCTGGTTTCATGGgtaagagtgg ... tgtttaccagATGTTGTATCCATTCCCAAGACAAATGAGAACTTCCGTCTCCTATATGACA
EST: gi|110422691|gb|EC989019.1|EC989019
EST:     ACAGACAAGACATACCCTTCTGGTTTCATGG                         ATGTTGTATCCATTCCCAAGACAAATGAGAACTTCCGTCTCCTATATGACA
genomic: ACAGACAAGACATACCCTTCTGGTTTCATGGgtaagagtgg ... tgtttaccagATGTTGTATCCATTCCCAAGACAAATGAGAACTTCCGTCTCCTATATGACA
EST: gi|33405639|gb|CF211266.1|CF211266
EST:     AGGACAGATAAGACATACCCTTCTGGTTTCATGG                         ATGTTGTATCCATTCCCAAGACAAATGAGAACTTCCGTCTCCTATATGACA
genomic: AGGACAGACAAGACATACCCTTCTGGTTTCATGGgtaagagtgg ... tgtttaccagATGTTGTATCCATTCCCAAGACAAATGAGAACTTCCGTCTCCTATATGACA
EST: gi|351022061|gb|FQ437848.1|FQ437848
EST:     TGTTGATGGGAAGGTTAGGACAGACAAGACATACCCTTCTGGTTTCATGG                         ATGTTGTATCCATTCCCAAGACAAATGAGAACTTCCGTCTCCTATATGACA
genomic: TGTTGATGGGAAGGTTAGGACAGACAAGACATACCCTTCTGGTTTCATGGgtaagagtgg ... tgtttaccagATGTTGTATCCATTCCCAAGACAAATGAGAACTTCCGTCTCCTATATGACA
EST: gi|349832530|gb|FQ421091.1|FQ421091
EST:     TGTTGATGGGAAGGTTAGGACAGACAAGACATACCCTTCTGGTTTCATGG                         ATGTTGTATCCATTCCCAAGACAAATGAGAACTTCCGTCTCCTATATGACA
genomic: TGTTGATGGGAAGGTTAGGACAGACAAGACATACCCTTCTGGTTTCATGGgtaagagtgg ... tgtttaccagATGTTGTATCCATTCCCAAGACAAATGAGAACTTCCGTCTCCTATATGACA
EST: gi|110688682|gb|EE067514.1|EE067514
EST:     TGTTGATGGGAAGGTTAGGACAGATAAGACATACCCTTCTGGTTTCATGG                         ATGTTGTATCCATTCCCAAGACAAATGAGAACTTCCGTCTCCTATATGACA
genomic: TGTTGATGGGAAGGTTAGGACAGACAAGACATACCCTTCTGGTTTCATGGgtaagagtgg ... tgtttaccagATGTTGTATCCATTCCCAAGACAAATGAGAACTTCCGTCTCCTATATGACA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctcctcattctggttgttggcactgtttcttctaattttgttatctgtttaccagATGTTGTATCCATTCCCAAGACAAATGAGAACTTCCGTCTCCTATATGACACAAAGGGCCGATTCAGACTCCACTCAATTAGGGATGAGGAGGCAAAG
                             ttctaat  putative branch site (score: 2)
                                           tctgttt  putative PPT
                             ttctaattttgttat  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
acatcctgctttgctgatagaatctctctactaaaaacacttgaactcctcattctggttgttggcactgtttcttctaattttgttatctgtttaccagATGTTGTATCCATTCCCAAGACAAATGAGAACTTCCGTCTCCTATATGACACAAAGGGCCGATTCAGACTCCACTCAATTAGGGATGAGGAGGCAAAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - cctgctt
- - - - - -tgctgat
- - - - - - - - - - - tctctct
- - - - - - - - - - - - - - - - aaaaaca
- - - - - - - - - - - - - - - - - - - - - - -ctcctca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgttggc