Skip to another splice site:
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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaattaggtgttctaatccatttttctaggtactctttgcagatcaacaattggttgctaaattttatattcatgtgcagGTTGACCGTGTGCTGTACTCTTCAGTTGTGTACCCCCACAACTATGGCTTTATCCCACGTACTCTCTGTGAGGACAATGACCCCATGGATGTCTTGGTTA

Basic information

species Vitis vinifera
transcript Vv08s0040g02470.t01
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv08s0040g02470.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: LOC_Os05g02310.1 (Oryza sativa), 3'ss of exon 4
-----------------------gtaattaggtgttctaatc------catttttctaggtactctttgcagatcaacaattggttgctaaattttatattcatgtgcagGTTGACCGTGTGCTGTACTCTTCAGTTGTGTACCCCCACAACTATGGCTTTATCCCACGTACTCTCTGTGAGGACAATGACCCCATGGATGTCTTGGTTA
                        | || |  | || || |        ||||||| ||  |||||    | ||      |   |   |   || |||   |||||  |||| ||||||||||| || || |||||||||||||| ||||||||||| || || || || || || ||||| |||| ||| ||  |||||||  ||||||
gtaaaacaaggcgattcaattgattcatcattttttttagtgaaaccatatttttccagtgactcta---aaatgttttgtacatcatttggttgtatgcacatgtaaagGTGGACCGTGTGCTCTATTCATCAGTTGTGTACCCTCACAACTATGGATTCATTCCTCGCACGCTGTGTGAAGACAGTGATCCGTTGGATGTGCTGGTTA

upper sequence: Vv08s0040g02470.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GRMZM2G137930_T02 (Zea mays), 3'ss of exon 5
----------------------gtaattaggtgttct----aatccatttttctaggtactctttgcagatcaacaattggttgctaaattttatattcatgtgcagGTTGACCGTGTGCTGTACTCTTCAGTTGTGTACCCCCACAACTATGGCTTTATCCCACGTACTCTCTGTGAGGACAATGACCCCATGGATGTCTTGGTTA
                          | | || || |    || | || ||||| |  | |  |   |  |  ||   |    | |  | | | | | ||||||||||| |||||||||||||| || |||||||| ||||| ||||||||||| || || || || || || ||||| |||| ||| ||  |||||||  ||||||
gtaaagcaatgttgttttcctcccgctgaagtcttattgtgaagctatatttcttgccagttctaata--tttactcctttccgtttcaatctgtgtgcatgtgcagGTGGACCGTGTGCTGTATTCATCAGTTGTTTACCCTCACAACTATGGATTCATTCCTCGCACGCTTTGTGAAGACAGTGATCCTTTGGATGTACTGGTTA

upper sequence: Vv08s0040g02470.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA10G05130.1 (Glycine max), 3'ss of exon 4
gtaatta--ggtgttctaatccatttttctaggtactctttgcagatcaacaattggttgctaaattttatattcatgtgcagGTTGACCGTGTGCTGTACTCTTCAGTTGTGTACCCCCACAACTATGGCTTTATCCCACGTACTCTCTGTGAGGACAATGACCCCATGGATGTCTTGGTTA
||||| |  | ||      |   | || |   ||     |||  | |  |  ||   ||||| ||      ||  ||||||||||||| ||| | || ||||| || |||||||| || ||||||||||| ||||||||||||||| | |||||||||  ||| |||||||||||||||||||
gtaatcatcgctgcctagttttttcttcccttgtcgcacttgttgctacaggat--attgctgaacag-gcatctatgtgcagGTTGATCGTATCCTTTACTCATCGGTTGTGTATCCTCACAACTATGGGTTTATCCCACGTACTATTTGTGAGGACGGTGATCCCATGGATGTCTTGGTTA

upper sequence: Vv08s0040g02470.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA13G19500.2 (Glycine max), 3'ss of exon 4
gtaattaggtgttctaatccatttttctaggtactctttgcagatcaacaattggttgctaaattttatattcatgtgcagGTTGACCGTGTGCTGTACTCTTCAGTTGTGTACCCCCACAACTATGGCTTTATCCCACGTACTCTCTGTGAGGACAATGACCCCATGGATGTCTTGGTTA
||||| | |  | |  | |  |||||||        |   |   |  |||     ||||| ||  |   ||  ||||||||||||| ||| | || ||||| |||||||| || || ||||||||||| ||||| ||||||||| | |||||||||  ||| |||||||||||||||||||
gtaatcatggttgcctagc--tttttcttcccttgttacacttgttgacaggatattgctgaacat-gcatctatgtgcagGTTGATCGTATACTTTACTCATCAGTTGTTTATCCTCACAACTATGGGTTTATTCCACGTACTATTTGTGAGGACGGTGATCCCATGGATGTCTTGGTTA

upper sequence: Vv08s0040g02470.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA03G33000.6 (Glycine max), 3'ss of exon 6
gtaattaggtgttctaatccatttttctaggtactctttgcagatcaacaattggttgctaaattttatattcatgtgcagGTTGACCGTGTGCTGTACTCTTCAGTTGTGTACCCCCACAACTATGGCTTTATCCCACGTACTCTCTGTGAGGACAATGACCCCATGGATGTCTTGGTTA
||    |    | |  |   ||||||     || | ||   |  ||||      ||| |||||   || ||  |||  ||| | |||||||| || ||||| ||||||||||| || ||||| ||||| ||||||||||||||| | |||||||||| ||| ||| ||||||||||| |||
gttgcaatcgttgcagagttattttttattatattgttactatgtcaa------gtt-ctaaacacta-atctatgaacagATCGACCGTGTTCTTTACTCATCAGTTGTGTATCCTCACAATTATGGGTTTATCCCACGTACTATTTGTGAGGACAGTGATCCCCTGGATGTCTTGATTA

upper sequence: Vv08s0040g02470.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA19G35710.1 (Glycine max), 3'ss of exon 6
gtaattaggtgttctaatccatttttctaggtactctttgcagatcaacaattggttgctaaattttatattcatgtgcagGTTGACCGTGTGCTGTACTCTTCAGTTGTGTACCCCCACAACTATGGCTTTATCCCACGTACTCTCTGTGAGGACAATGACCCCATGGATGTCTTGGTTA
||  | |    | || |   |||||      |||  ||   |  ||||      |||||||||   || ||  |||  ||| | ||||| ||||| ||||| |||||||| || || ||||||||||| |||||||| |||||| | |||||||||| ||| ||| ||||||||||| |||
gttgtaatagttgctgagttattttcgattctacggttactaagtcaa------gttgctaaacacta-atctatgcacagATCGACCGCGTGCTTTACTCATCAGTTGTTTATCCTCACAACTATGGGTTTATCCCTCGTACTATTTGTGAGGACAGTGATCCCCTGGATGTCTTGATTA

upper sequence: Vv08s0040g02470.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: PP1S46_53V6.1 (Physcomitrella patens), 3'ss of exon 5
------------------gtaatt--aggtgttctaatc--catttttctaggtactctttgc--agatcaacaattggttgctaaattttatattcatgtgcagGTTGACCGTGTGCTGTACTCTTCAGTTGTGTACCCCCACAACTATGGCTTTATCCCACGTACTCTCTGTGAGGACAATGACCCCATGGATGTCTTGGTTA
                   ||| |  |   | |||  ||  ||| | |  | |  || || ||   | ||||| |  | |   |||  || |  |   | | |||||||| ||| |  ||||||| |||||||| || || ||||| ||||| || || ||||||||||| ||||||||  | || ||||| |||||  | || |
gtacgtcattgccagtgactaactctaaacgatcttgtcttcatatcttcacgagctgttggcttggctcaaccaccgctccttaatcttaacctcatttttcagGTTGATCGTATCTTGTACTCATCAGTTGTCTATCCACACAATTATGGGTTCATTCCACGTACTCTTTGTGAGGATGAGGATCCCATTGATGTTCTCGTCA

upper sequence: Vv08s0040g02470.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: EFJ27219 (Selaginella moellendorffii), 3'ss of exon 3
gtaattaggtgttctaatccatttttctaggtactctttgcagatcaacaattggttgctaaattttatattca---tgtgcagGTTGACCGTGTGCTGTACTCTTCAGTTGTGTACCCCCACAACTATGGCTTTATCCCACGTACTCTCTGTGAGGACAATGACCCCATGGATGTCTTGGTTA
                             | |    |  | ||| |||  |||  | | ||  | |||| || |   || |||||||||| | ||||||||||| || || |||||||||||||||||||| || || || |||||||| || || ||||| || ||  |||| ||||||||  
-----------------------------gtttgattgaggagaacaaacattt-tggatacttcttatttttaaactgcgcagGTTGACAGGGTGCTGTACTCGTCGGTCGTGTACCCCCACAACTATGGTTTCATTCCTCGTACTCTGTGCGAAGACAACGATCCATTGGACGTCTTGGTCC

upper sequence: Vv08s0040g02470.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: EFJ33440 (Selaginella moellendorffii), 3'ss of exon 3
gtaattaggtgttctaatccatttttctaggtactctttgcagatcaacaatt--ggttgctaaattttatattcatgtgcagGTTGACCGTGTGCTGTACTCTTCAGTTGTGTACCCCCACAACTATGGCTTTATCCCACGTACTCTCTGTGAGGACAATGACCCCATGGATGTCTTGGTTA
                             | |    |  | ||| |||  |||  || | ||   | || ||    || |||||||||| | ||||||||||| || || ||||||||||||||||||||||| || || |||||||| || || ||||| || ||  |||| ||||||||  
-----------------------------gtttgattgaggagaacaaacattttggatacttcttattttaaaactgcgcagGTTGACAGGGTGCTGTACTCGTCGGTCGTGTACCCCCACAACTATGGCTTCATTCCTCGTACTCTGTGCGAAGACAACGATCCATTGGACGTCTTGGTCC

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71889504|gb|DT038559.1|DT038559
EST:     AAGGGAGCAAGGTGAAATATGAACTTGACAAGAAAACTGGACTGATCAAG                         GTTGACCGTGTGCTGTACTCTTCAGTCGTGTACCCCCACAACTATGGCTTT
genomic: AAGGGAGCAAGGTGAAATATGAACTTGACAAGAAAACTGGACTGATCAAGgtaattaggt ... tcatgtgcagGTTGACCGTGTGCTGTACTCTTCAGTTGTGTACCCCCACAACTATGGCTTT
EST: gi|71878052|gb|DT027107.1|DT027107
EST:     AAGGGAGCAAGGTGAAATATGAACTTGACAAGAAAACTGGACTGATCAAG                         GTTGACCGTGTGCTGTACTCTTCAGTCGTGTACCCCCACAACTATGGCTTT
genomic: AAGGGAGCAAGGTGAAATATGAACTTGACAAGAAAACTGGACTGATCAAGgtaattaggt ... tcatgtgcagGTTGACCGTGTGCTGTACTCTTCAGTTGTGTACCCCCACAACTATGGCTTT
EST: gi|110364488|gb|EC924298.1|EC924298
EST:     AAGGGAGCAAGGTGAAATATGAACTTGACAAGAAAACTGGACTGATCAAG                         GTTGACCGTGTGCTGTACTCTTCAGTCGTGTACCCCCACAACTATGGCTTT
genomic: AAGGGAGCAAGGTGAAATATGAACTTGACAAGAAAACTGGACTGATCAAGgtaattaggt ... tcatgtgcagGTTGACCGTGTGCTGTACTCTTCAGTTGTGTACCCCCACAACTATGGCTTT
EST: gi|30128230|gb|CB913569.1|CB913569
EST:     AAGGGAGCAAGGTGAAATATGAACTTGACAAGAAAACTGGACTGATCAAG                         GTTGACCGTGTGCTGTACTCTTCAGTCGTGTACCCCCACAACTATGGCTTT
genomic: AAGGGAGCAAGGTGAAATATGAACTTGACAAGAAAACTGGACTGATCAAGgtaattaggt ... tcatgtgcagGTTGACCGTGTGCTGTACTCTTCAGTTGTGTACCCCCACAACTATGGCTTT
EST: gi|18458986|gb|BM437264.1|BM437264
EST:     AAGGGAGCAAGGTGAAATATGAACTTGACAAGAAAACTGGACTGATCAAG                         GTTGACCGTGTGCTGTACTCTTCAGTTGTGTACCCCCACAACTATGGCTTT
genomic: AAGGGAGCAAGGTGAAATATGAACTTGACAAGAAAACTGGACTGATCAAGgtaattaggt ... tcatgtgcagGTTGACCGTGTGCTGTACTCTTCAGTTGTGTACCCCCACAACTATGGCTTT
EST: gi|110375226|gb|EC940190.1|EC940190
EST:     AAGGGAGCAAGGTGAAATATGAACTTGACAAGAAAACTGGACTGATCAAG                         GTTGACCGTGTGCTGTACTCTTCAGTCGTGTACCCCCACAACTATGGCTTT
genomic: AAGGGAGCAAGGTGAAATATGAACTTGACAAGAAAACTGGACTGATCAAGgtaattaggt ... tcatgtgcagGTTGACCGTGTGCTGTACTCTTCAGTTGTGTACCCCCACAACTATGGCTTT
EST: gi|32248919|gb|CD714738.1|CD714738
EST:     AAGGGAGCAAGGTGAAATATGAACTTGACAAGAAAACTGGACTGATCAAG                         GTTGACCGTGTGCTGTACTCTTCAGTCGTGTACCCCCACAACTATGGCTTT
genomic: AAGGGAGCAAGGTGAAATATGAACTTGACAAGAAAACTGGACTGATCAAGgtaattaggt ... tcatgtgcagGTTGACCGTGTGCTGTACTCTTCAGTTGTGTACCCCCACAACTATGGCTTT
EST: gi|30124847|gb|CB910186.1|CB910186
EST:     AAGGGAGCAAGGTGAAATATGAACTTGACAAGAAAACTGGACTGATCAAG                         GTTGACCGTGTGCTGTACTCTTCAGTTGTGTACCCCCACAACTATGGCTTT
genomic: AAGGGAGCAAGGTGAAATATGAACTTGACAAGAAAACTGGACTGATCAAGgtaattaggt ... tcatgtgcagGTTGACCGTGTGCTGTACTCTTCAGTTGTGTACCCCCACAACTATGGCTTT
EST: gi|71885238|gb|DT034293.1|DT034293
EST:     AAGGGAGCAAGGTGAAATATGAACTTGACAAGAAAACTGGACTGATCAAG                         GTTGACCGTGTGCTGTACTCTTCAGTCGTGTACCCCCACAACTATGGCTTT
genomic: AAGGGAGCAAGGTGAAATATGAACTTGACAAGAAAACTGGACTGATCAAGgtaattaggt ... tcatgtgcagGTTGACCGTGTGCTGTACTCTTCAGTTGTGTACCCCCACAACTATGGCTTT
EST: gi|110428791|gb|EC995272.1|EC995272
EST:     AAGGGAGCAAGGTGAAATATGAACTTGACAAGAAAACTGGACTGATCAAG                         GTTGACCGTGTGCTGTACTCTTCAGTCGTGTACCCCCACAACTATGGCTTT
genomic: AAGGGAGCAAGGTGAAATATGAACTTGACAAGAAAACTGGACTGATCAAGgtaattaggt ... tcatgtgcagGTTGACCGTGTGCTGTACTCTTCAGTTGTGTACCCCCACAACTATGGCTTT
EST: gi|32272447|gb|CD721606.1|CD721606
EST:     AAGGGAGCAAGGTGAAATATGAACTTGACAAGAAAACTGGACTGATCAAG                         GTTGACCGTGTGCTGTACTCTTCAGTTGTGTACCCCCACAACTATGGCTTT
genomic: AAGGGAGCAAGGTGAAATATGAACTTGACAAGAAAACTGGACTGATCAAGgtaattaggt ... tcatgtgcagGTTGACCGTGTGCTGTACTCTTCAGTTGTGTACCCCCACAACTATGGCTTT
EST: gi|32248310|gb|CD714129.1|CD714129
EST:     AAGGGAGCAAGGTGAAATATGAACTTGACAAGAAAACTGGACTGATCAAG                         GTTGACCGTGTGCTGTACTCTTCAGTCGTGTACCCCCACAACTATGGCTTT
genomic: AAGGGAGCAAGGTGAAATATGAACTTGACAAGAAAACTGGACTGATCAAGgtaattaggt ... tcatgtgcagGTTGACCGTGTGCTGTACTCTTCAGTTGTGTACCCCCACAACTATGGCTTT
EST: gi|110429862|gb|EC996373.1|EC996373
EST:     AAGGGAGCAAGGTGAAATATGAACTTGACAAGAAAACTGGACTGATCAAG                         GTTGACCGTGTGCTGTACTCTTCAGTCGTGTACCCCCACAACTATGGCTTT
genomic: AAGGGAGCAAGGTGAAATATGAACTTGACAAGAAAACTGGACTGATCAAGgtaattaggt ... tcatgtgcagGTTGACCGTGTGCTGTACTCTTCAGTTGTGTACCCCCACAACTATGGCTTT
EST: gi|71882429|gb|DT031484.1|DT031484
EST:     AAGGGAGCAAGGTGAAATATGAACTTGACAAGAAAACTGGACTGATCAAG                         GTTGACCGTGTGCTGTACTCTTCAGTCGTGTACCCCCACAACTATGGCTTT
genomic: AAGGGAGCAAGGTGAAATATGAACTTGACAAGAAAACTGGACTGATCAAGgtaattaggt ... tcatgtgcagGTTGACCGTGTGCTGTACTCTTCAGTTGTGTACCCCCACAACTATGGCTTT
EST: gi|33406231|gb|CF211858.1|CF211858
EST:     AAGGGAGCAAGGTGAAATATGAACTTGACAAGAAAACTGGACTGATCAAG                         GTTGACCGTGTGCTGTACTTTTCAGTCGTGTACCCCCACAACTATGGCTTT
genomic: AAGGGAGCAAGGTGAAATATGAACTTGACAAGAAAACTGGACTGATCAAGgtaattaggt ... tcatgtgcagGTTGACCGTGTGCTGTACTCTTCAGTTGTGTACCCCCACAACTATGGCTTT
EST: gi|110383531|gb|EC947909.1|EC947909
EST:     AAGGGAGCAAGGTGAAATATGAACTTGACAAGAAAACTGGACTGATCAAG                         GTTGACCGTGTGCTGTACTCTTCAGTCGTGTACCCCCACAACTATGGCTTT
genomic: AAGGGAGCAAGGTGAAATATGAACTTGACAAGAAAACTGGACTGATCAAGgtaattaggt ... tcatgtgcagGTTGACCGTGTGCTGTACTCTTCAGTTGTGTACCCCCACAACTATGGCTTT
EST: gi|71883308|gb|DT032363.1|DT032363
EST:     AAGGGAGCAAGGTGAAATATGAACTTGACAAGAAAACTGGACTGATCAAG                         GTTGACCGTGTGCTGTACTCTTCAGTCGTGTACCCCCACAACTATGGCTTT
genomic: AAGGGAGCAAGGTGAAATATGAACTTGACAAGAAAACTGGACTGATCAAGgtaattaggt ... tcatgtgcagGTTGACCGTGTGCTGTACTCTTCAGTTGTGTACCCCCACAACTATGGCTTT
EST: gi|110360555|gb|EC923759.1|EC923759
EST:     AAGGGAGCAAGGTGAAATATGAACTTGACAAGAAAACTGGACTGATCAAG                         GTTGACCGTGTGCTGTACTCTTCAGTCGTGTACCCCCACAACTATGGCTTT
genomic: AAGGGAGCAAGGTGAAATATGAACTTGACAAGAAAACTGGACTGATCAAGgtaattaggt ... tcatgtgcagGTTGACCGTGTGCTGTACTCTTCAGTTGTGTACCCCCACAACTATGGCTTT
EST: gi|110708943|gb|EE083969.1|EE083969
EST:     AAGGGAGCAAGGTGAAATATGAACTTGACAAGAAAACTGGACTGATCAAG                         GTTGACCGTGTGCTGTACTCTTCAGTCGTGTACCCCCACAACTATGGCTTT
genomic: AAGGGAGCAAGGTGAAATATGAACTTGACAAGAAAACTGGACTGATCAAGgtaattaggt ... tcatgtgcagGTTGACCGTGTGCTGTACTCTTCAGTTGTGTACCCCCACAACTATGGCTTT
EST: gi|110706103|gb|EE083706.1|EE083706
EST:     AAGGGAGCAAGGTGAAATATGAACTTGACAAGAAAACTGGACTGATCAAG                         GTTGACCGTGTGCTGTACTCTTCAGTCGTGTACCCCCACAACTATGGCTTT
genomic: AAGGGAGCAAGGTGAAATATGAACTTGACAAGAAAACTGGACTGATCAAGgtaattaggt ... tcatgtgcagGTTGACCGTGTGCTGTACTCTTCAGTTGTGTACCCCCACAACTATGGCTTT
EST: gi|110717369|gb|EE093164.1|EE093164
EST:     AAGGGAGCAAGGTGAAATATGAACTTGACAAGAAAACTGGACTGATCAAG                         GTTGACCGTGTGCTGTACTCTTCAGTCGTGTACCCCCACAACTATGGCTTT
genomic: AAGGGAGCAAGGTGAAATATGAACTTGACAAGAAAACTGGACTGATCAAGgtaattaggt ... tcatgtgcagGTTGACCGTGTGCTGTACTCTTCAGTTGTGTACCCCCACAACTATGGCTTT
EST: gi|71881781|gb|DT030836.1|DT030836
EST:     AAGGGAGCAAGGTGAAATATGAACTTGACAAGAAAACTGGACTGATCAAG                         GTTGACCGTGTGCTGTACTCTTCAGTCGTGTACCCCCACAACTATGGCTTT
genomic: AAGGGAGCAAGGTGAAATATGAACTTGACAAGAAAACTGGACTGATCAAGgtaattaggt ... tcatgtgcagGTTGACCGTGTGCTGTACTCTTCAGTTGTGTACCCCCACAACTATGGCTTT
EST: gi|110701996|gb|EE080208.1|EE080208
EST:     AAGGGAGCAAGGTGAAATATGAACTTGACAAGAAAACTGGACTGATCAAA                         GTTGACCGTGTGCTGTACTCTTCAGTCGTGTACCCCCACAACTATGGCTTT
genomic: AAGGGAGCAAGGTGAAATATGAACTTGACAAGAAAACTGGACTGATCAAGgtaattaggt ... tcatgtgcagGTTGACCGTGTGCTGTACTCTTCAGTTGTGTACCCCCACAACTATGGCTTT
EST: gi|32271061|gb|CD720220.1|CD720220
EST:     AAGGGAGCAAGGTGAAATATGAACTTGACAAGAAAACTGGACTGATCAAG                         GTTGACCGTGTGCTGTACTCTTCAGTTGTGTACCCCCACAACTATGGCTTT
genomic: AAGGGAGCAAGGTGAAATATGAACTTGACAAGAAAACTGGACTGATCAAGgtaattaggt ... tcatgtgcagGTTGACCGTGTGCTGTACTCTTCAGTTGTGTACCCCCACAACTATGGCTTT
EST: gi|110717373|gb|EE093175.1|EE093175
EST:     AAGGGAGCAAGGTGAAATATGAACTTGACAAGAAAACTGGACTGATCAAG                         GTTGACCGTGTGCTGTACTCTTCAGTCGTGTACCCCCACAACTATGGCTTT
genomic: AAGGGAGCAAGGTGAAATATGAACTTGACAAGAAAACTGGACTGATCAAGgtaattaggt ... tcatgtgcagGTTGACCGTGTGCTGTACTCTTCAGTTGTGTACCCCCACAACTATGGCTTT
EST: gi|27584534|gb|CB007229.1|CB007229
EST:     AAGGGAGCAAGGTGAAATATGAACTTGACAAGAAAACTGGACTGATCAAG                         GTTGACCGTGTGCTGTACTCTTCAGTCGTGTACCCCCACAACTATGGCTTT
genomic: AAGGGAGCAAGGTGAAATATGAACTTGACAAGAAAACTGGACTGATCAAGgtaattaggt ... tcatgtgcagGTTGACCGTGTGCTGTACTCTTCAGTTGTGTACCCCCACAACTATGGCTTT
EST: gi|110731173|gb|EE109089.1|EE109089
EST:     AAGGGAGCAAGGTGAAATATGAACTTGACAAGAAAACTGGACTGATCAAG                         GTTGACCGTGTGCTGTACTCTTCAGTCGTGTACCCCCACAACTATGGCTTT
genomic: AAGGGAGCAAGGTGAAATATGAACTTGACAAGAAAACTGGACTGATCAAGgtaattaggt ... tcatgtgcagGTTGACCGTGTGCTGTACTCTTCAGTTGTGTACCCCCACAACTATGGCTTT
EST: gi|32272325|gb|CD721484.1|CD721484
EST:     AAGGGAGCAAGGTGAAATATGAACTTGACAAGAAAACTGGACTGATCAAG                         GTTGACCGTGTGCTGTACTCTTCAGTCGTGTACCCCCACAACTATGGCTTT
genomic: AAGGGAGCAAGGTGAAATATGAACTTGACAAGAAAACTGGACTGATCAAGgtaattaggt ... tcatgtgcagGTTGACCGTGTGCTGTACTCTTCAGTTGTGTACCCCCACAACTATGGCTTT
EST: gi|71888705|gb|DT037760.1|DT037760
EST:     AAGGGAGCAAGGTGAAATATGAACTTGACAAGAAAACTGGACTGATCAAG                         GTTGACCGTGTGCTGTACTCTTCAGTCGTGTACCCCCACAACTATGGCTTT
genomic: AAGGGAGCAAGGTGAAATATGAACTTGACAAGAAAACTGGACTGATCAAGgtaattaggt ... tcatgtgcagGTTGACCGTGTGCTGTACTCTTCAGTTGTGTACCCCCACAACTATGGCTTT
EST: gi|110686108|gb|EE063413.1|EE063413
EST:     AAGGGAGCAAGGTGAAATATGAACTTGACAAGAAAACTGGACTGATCAAG                         GTTGACCGTGTGCTGTACTCTTCAGTCGTGTACCCCCACAACTATGGCTTT
genomic: AAGGGAGCAAGGTGAAATATGAACTTGACAAGAAAACTGGACTGATCAAGgtaattaggt ... tcatgtgcagGTTGACCGTGTGCTGTACTCTTCAGTTGTGTACCCCCACAACTATGGCTTT
EST: gi|110725753|gb|EE102618.1|EE102618
EST:     AAGGGAGCAAGGTGAAATATGAACTTGACAAGAAAACTGGACTGATCAAG                         GTTGACCGTGTGCTGTACTCTTCAGTCGTGTACCCCCACAACTATGGCTTT
genomic: AAGGGAGCAAGGTGAAATATGAACTTGACAAGAAAACTGGACTGATCAAGgtaattaggt ... tcatgtgcagGTTGACCGTGTGCTGTACTCTTCAGTTGTGTACCCCCACAACTATGGCTTT
EST: gi|110688777|gb|EE067713.1|EE067713
EST:     AAGGGAGCAAGGTGAAATATGAACTTGACAAGAAAACTGGACTGATCAAG                         GTTGACCGTGTGCTGTACTCTTCAGTCGTGTACCCCCACAACTATGGCTTT
genomic: AAGGGAGCAAGGTGAAATATGAACTTGACAAGAAAACTGGACTGATCAAGgtaattaggt ... tcatgtgcagGTTGACCGTGTGCTGTACTCTTCAGTTGTGTACCCCCACAACTATGGCTTT
EST: gi|110717105|gb|EE092669.1|EE092669
EST:     AAGGGAGCAAGGTGAAATATGAACTTGACAAGAAAACTGGACTGATCAAG                         GTTGACCGTGTGCTGTACTCTTCAGTCGTGTACCCCCACAACTATGGCTTT
genomic: AAGGGAGCAAGGTGAAATATGAACTTGACAAGAAAACTGGACTGATCAAGgtaattaggt ... tcatgtgcagGTTGACCGTGTGCTGTACTCTTCAGTTGTGTACCCCCACAACTATGGCTTT
EST: gi|30129868|gb|CB915207.1|CB915207
EST:     AAGGGAGCAAGGTGAAATATGAACTTGACAAGAAAACTGGACTGATCAAG                         GTTGACCGTGTGCTGTACTCTTCAGTTGTGTACCCCCACAACTATGGCTTT
genomic: AAGGGAGCAAGGTGAAATATGAACTTGACAAGAAAACTGGACTGATCAAGgtaattaggt ... tcatgtgcagGTTGACCGTGTGCTGTACTCTTCAGTTGTGTACCCCCACAACTATGGCTTT
EST: gi|27583109|gb|CB005804.1|CB005804
EST:     AAGGGAGCAAGGTGAAATATGAACTTGACAAGAAAACTGGACTGATCAAG                         GTTGACCGTGTGCTGTACTCTTCAGTTGTGTACCCCCACAACTATGGCTTT
genomic: AAGGGAGCAAGGTGAAATATGAACTTGACAAGAAAACTGGACTGATCAAGgtaattaggt ... tcatgtgcagGTTGACCGTGTGCTGTACTCTTCAGTTGTGTACCCCCACAACTATGGCTTT
EST: gi|110369553|gb|EC933716.1|EC933716
EST:     AAGGGAGCAAGGTGAAATATGAACTTGACAAGAAAACTGGACTGATCAAG                         GTTGACCGTGTGCTGTACTCTTCAGTCGTGTACCCCCACAACTATGGCTTT
genomic: AAGGGAGCAAGGTGAAATATGAACTTGACAAGAAAACTGGACTGATCAAGgtaattaggt ... tcatgtgcagGTTGACCGTGTGCTGTACTCTTCAGTTGTGTACCCCCACAACTATGGCTTT
EST: gi|351025513|gb|FQ435206.1|FQ435206
EST:     AAGGGAGCAAGGTGAAATATGAACTTGACAAGAAAACTGGACTGATCAAG                         GTTGACCGTGTGCTGTACTCTTCAGTTGTGTACCCCCACAACTATGGCTTT
genomic: AAGGGAGCAAGGTGAAATATGAACTTGACAAGAAAACTGGACTGATCAAGgtaattaggt ... tcatgtgcagGTTGACCGTGTGCTGTACTCTTCAGTTGTGTACCCCCACAACTATGGCTTT
EST: gi|110717897|gb|EE094154.1|EE094154
EST:     AAGGGAGCAAGGTGAAATATGAACTTGACAAGAAAACTGGACTGATCAAG                         GTTGACCGTGTGCTGTACTCTTCAGTCGTGTACCCCCACAACTATGGCTTT
genomic: AAGGGAGCAAGGTGAAATATGAACTTGACAAGAAAACTGGACTGATCAAGgtaattaggt ... tcatgtgcagGTTGACCGTGTGCTGTACTCTTCAGTTGTGTACCCCCACAACTATGGCTTT
EST: gi|32249271|gb|CD715090.1|CD715090
EST:     AAGGGAGCAAGGTGAAATATGAACTTGACAAGAAAACTGGACTGATCAAG                         GTTGACCGTGTGCTGTACTCTTCAGTCGTGTACCCCCACAACTATGGCTTT
genomic: AAGGGAGCAAGGTGAAATATGAACTTGACAAGAAAACTGGACTGATCAAGgtaattaggt ... tcatgtgcagGTTGACCGTGTGCTGTACTCTTCAGTTGTGTACCCCCACAACTATGGCTTT
EST: gi|110730667|gb|EE108007.1|EE108007
EST:     AAGGGAGCAAGGTGAAATATGAACTTGACAAGAAAACTGGACTGATCAAG                         GTTGACCGTGTGCTGTACTCTTCAGTCGTGTACCCCCACAACTATGGCTTT
genomic: AAGGGAGCAAGGTGAAATATGAACTTGACAAGAAAACTGGACTGATCAAGgtaattaggt ... tcatgtgcagGTTGACCGTGTGCTGTACTCTTCAGTTGTGTACCCCCACAACTATGGCTTT
EST: gi|110703181|gb|EE079800.1|EE079800
EST:     AAGGGAGCAAGGTGAAATATGAACTTGACAAGAAAACTGGACTGATCAAG                         GTTGACCGTGTGCTGTACTCTTCAGTCGTGTACCCCCACAACTATGGCTTT
genomic: AAGGGAGCAAGGTGAAATATGAACTTGACAAGAAAACTGGACTGATCAAGgtaattaggt ... tcatgtgcagGTTGACCGTGTGCTGTACTCTTCAGTTGTGTACCCCCACAACTATGGCTTT
EST: gi|30136583|gb|CB921921.1|CB921921
EST:     AAGGGAGCAAGGTGAAATATGAACTTGACAAGAAAACTGGACTGATCAAG                         GTTGACCGTGTGCTGTACTCTTCAGTCGTGTACCCCCACAACTATGGCTTT
genomic: AAGGGAGCAAGGTGAAATATGAACTTGACAAGAAAACTGGACTGATCAAGgtaattaggt ... tcatgtgcagGTTGACCGTGTGCTGTACTCTTCAGTTGTGTACCCCCACAACTATGGCTTT
EST: gi|32249038|gb|CD714857.1|CD714857
EST:     AAGGGAGCAAGGTGAAATATGAACTTGACAAGAAAACTGGACTGATCAAG                         GTTGACCGTGTGCTGTACTCTTCAGTTGTGTACCCCCACAACTATGGCTTT
genomic: AAGGGAGCAAGGTGAAATATGAACTTGACAAGAAAACTGGACTGATCAAGgtaattaggt ... tcatgtgcagGTTGACCGTGTGCTGTACTCTTCAGTTGTGTACCCCCACAACTATGGCTTT
EST: gi|110383209|gb|EC947567.1|EC947567
EST:     GCAAGGTGAAATATGAACTTGACAAGAAAACTGGACTGATCAAG                         GTTGACCGTGTGCTGTACTCTTCAGTCGTGTACCCCCACAACTATGGCTTT
genomic: GCAAGGTGAAATATGAACTTGACAAGAAAACTGGACTGATCAAGgtaattaggt ... tcatgtgcagGTTGACCGTGTGCTGTACTCTTCAGTTGTGTACCCCCACAACTATGGCTTT
EST: gi|110727272|gb|EE103839.1|EE103839
EST:     AAGGGAGCAAGGTGAAATATGAACTTGACAAGAAAACTGGACTGATCAAG                         GTTGACCGTGTGCTGTACTCTTCAGTCGTGTACCCCCACAACTATGGCTTT
genomic: AAGGGAGCAAGGTGAAATATGAACTTGACAAGAAAACTGGACTGATCAAGgtaattaggt ... tcatgtgcagGTTGACCGTGTGCTGTACTCTTCAGTTGTGTACCCCCACAACTATGGCTTT
EST: gi|46918179|gb|CN547508.1|CN547508
EST:     AGGGAGCAAGGTGAAATATGAACTTGACAAGAAAACTGGACTGATCAAG                         GTTGACCGTGTGCTGTACTCTTCAGTTGTGTACCCCCACAACTATGGCTTT
genomic: AGGGAGCAAGGTGAAATATGAACTTGACAAGAAAACTGGACTGATCAAGgtaattaggt ... tcatgtgcagGTTGACCGTGTGCTGTACTCTTCAGTTGTGTACCCCCACAACTATGGCTTT
EST: gi|71877690|gb|DT026745.1|DT026745
EST:     AAGGGAGCAAGGTGAAATATGAACTTGACAAGAAAACTGGACTGATCAAG                         GTTGACCGTGTGCTGTACTCTTCAGTCGTGTACCCCCACAACTATGGCTTT
genomic: AAGGGAGCAAGGTGAAATATGAACTTGACAAGAAAACTGGACTGATCAAGgtaattaggt ... tcatgtgcagGTTGACCGTGTGCTGTACTCTTCAGTTGTGTACCCCCACAACTATGGCTTT
EST: gi|33406869|gb|CF212496.1|CF212496
EST:     AAGGGAGCAAGGTGAAATATGAACTTGACAAGAAAACTGGACTGATCAAG                         GTTGACCGTGTGCTGTACTCTTCAGTCGTGTACCCCCACAACTATGGCTTT
genomic: AAGGGAGCAAGGTGAAATATGAACTTGACAAGAAAACTGGACTGATCAAGgtaattaggt ... tcatgtgcagGTTGACCGTGTGCTGTACTCTTCAGTTGTGTACCCCCACAACTATGGCTTT
EST: gi|110700548|gb|EE078712.1|EE078712
EST:     AAGGGAGCAAGGTGAAATATGAACTTGACAAGAAAACTGGACTGATCAAG                         GTTGACCGTGTGCTGTACTCTTCAGTCGTGTACCCCCACAACTATGGCTTT
genomic: AAGGGAGCAAGGTGAAATATGAACTTGACAAGAAAACTGGACTGATCAAGgtaattaggt ... tcatgtgcagGTTGACCGTGTGCTGTACTCTTCAGTTGTGTACCCCCACAACTATGGCTTT
EST: gi|110690416|gb|EE067494.1|EE067494
EST:     AAGGGAGCAAGGTGAAATATGAACTTGACAAGAAAACTGGACTGATCAAG                         GTTGACCGTGTGCTGTACTCTTCAGTCGTGTACCCCCACAACTATGGCTTT
genomic: AAGGGAGCAAGGTGAAATATGAACTTGACAAGAAAACTGGACTGATCAAGgtaattaggt ... tcatgtgcagGTTGACCGTGTGCTGTACTCTTCAGTTGTGTACCCCCACAACTATGGCTTT
EST: gi|71878583|gb|DT027638.1|DT027638
EST:     AAGGGAGCAAGGTGAAATATGAACTTGACAAGAAAACTGGACTGATCAAG                         GTTGACCGTGTGCTGTACTCTTCAGTCGTGTACCCCCACAACTATGGCTTT
genomic: AAGGGAGCAAGGTGAAATATGAACTTGACAAGAAAACTGGACTGATCAAGgtaattaggt ... tcatgtgcagGTTGACCGTGTGCTGTACTCTTCAGTTGTGTACCCCCACAACTATGGCTTT
EST: gi|71888253|gb|DT037308.1|DT037308
EST:     AAGGGAGCAAGGTGAAATATGAACTTGACAAGAAAACTGGACTGATCAAG                         GTTGACCGTGTGCTGTACTCTTCAGTCGTGTACCCCCACAACTATGGCTTT
genomic: AAGGGAGCAAGGTGAAATATGAACTTGACAAGAAAACTGGACTGATCAAGgtaattaggt ... tcatgtgcagGTTGACCGTGTGCTGTACTCTTCAGTTGTGTACCCCCACAACTATGGCTTT
EST: gi|32271206|gb|CD720365.1|CD720365
EST:     AAGGGAGCAAGGTGAAATATGAACTTGACAAGAAAACTGGACTGATCAAG                         GTTGACCGTGTGCTGTACTCTTCAGTTGTGTACCCCCACAACTATGGCTTT
genomic: AAGGGAGCAAGGTGAAATATGAACTTGACAAGAAAACTGGACTGATCAAGgtaattaggt ... tcatgtgcagGTTGACCGTGTGCTGTACTCTTCAGTTGTGTACCCCCACAACTATGGCTTT
EST: gi|110723089|gb|EE099999.1|EE099999
EST:     AAGGGAGCAAGGTGAAATATGAACTTGACAAGAAAACTGGACTGATCAAG                         GTTGACCGTGTGCTGTACTCTTCAGTCGTGTACCCCCACAACTATGGCTTT
genomic: AAGGGAGCAAGGTGAAATATGAACTTGACAAGAAAACTGGACTGATCAAGgtaattaggt ... tcatgtgcagGTTGACCGTGTGCTGTACTCTTCAGTTGTGTACCCCCACAACTATGGCTTT
EST: gi|110397892|gb|EC963867.1|EC963867
EST:     AAGGGAGCAAGGTGAAATATGAACTTGACAAGAAAACTGGACTGATCAAG                         GTTGACCGTGTGCTGTACTCTTCAGTCGTGTACCCCCACAACTATGGCTTT
genomic: AAGGGAGCAAGGTGAAATATGAACTTGACAAGAAAACTGGACTGATCAAGgtaattaggt ... tcatgtgcagGTTGACCGTGTGCTGTACTCTTCAGTTGTGTACCCCCACAACTATGGCTTT
EST: gi|351012488|gb|FQ427089.1|FQ427089
EST:     AAGGGAGCAAGGTGAAATATGAACTTGACAAGAAAACTGGACTGATCAAG                         GTCGACCGTGTGCTGTACTCTTCAGTCGTGTACCCCCACAACTATGGCTTT
genomic: AAGGGAGCAAGGTGAAATATGAACTTGACAAGAAAACTGGACTGATCAAGgtaattaggt ... tcatgtgcagGTTGACCGTGTGCTGTACTCTTCAGTTGTGTACCCCCACAACTATGGCTTT
EST: gi|110374151|gb|EC938723.1|EC938723
EST:     AAGGGAGCAAGGTGAAATATGAACTTGACAAGAAAACTGGACTGATCAAG                         GTTGACCGTGTGCTGTACTCTTCAGTCGTGTACCCCCACAACTATGGCTTT
genomic: AAGGGAGCAAGGTGAAATATGAACTTGACAAGAAAACTGGACTGATCAAGgtaattaggt ... tcatgtgcagGTTGACCGTGTGCTGTACTCTTCAGTTGTGTACCCCCACAACTATGGCTTT
EST: gi|110384899|gb|EC949367.1|EC949367
EST:     AAGGGAGCAAGGTGAAATATGAACTTGACAAGAAAACTGGACTGATCAAG                         GTTGACCGTGTGCTGTACTCTTCAGTCGTGTACCCCCACAACTATGGCTTT
genomic: AAGGGAGCAAGGTGAAATATGAACTTGACAAGAAAACTGGACTGATCAAGgtaattaggt ... tcatgtgcagGTTGACCGTGTGCTGTACTCTTCAGTTGTGTACCCCCACAACTATGGCTTT
EST: gi|32267585|gb|CD716548.1|CD716548
EST:     AAGGGAGCAAGGTGAAATATGAACTTGACAAGAAAACTGGACTGATCAAG                         GTTGACCGTGTGCTGTACTCTTCAGTCGTGTACCCCCACAACTATGGCTTT
genomic: AAGGGAGCAAGGTGAAATATGAACTTGACAAGAAAACTGGACTGATCAAGgtaattaggt ... tcatgtgcagGTTGACCGTGTGCTGTACTCTTCAGTTGTGTACCCCCACAACTATGGCTTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctaggtactctttgcagatcaacaattggttgctaaattttatattcatgtgcagGTTGACCGTGTGCTGTACTCTTCAGTTGTGTACCCCCACAACTATGGCTTTATCCCACGTACTCTCTGTGAGGACAATGACCCCATGGATGTCTTGGTTA
                              tgctaaa  putative branch site (score: 2)
                                 taaattttatattcat  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtaattaggtgttctaatccatttttctaggtactctttgcagatcaacaattggttgctaaattttatattcatgtgcagGTTGACCGTGTGCTGTACTCTTCAGTTGTGTACCCCCACAACTATGGCTTTATCCCACGTACTCTCTGTGAGGACAATGACCCCATGGATGTCTTGGTTA

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA