Sequence
atgc intronic sequence ATGC exonic sequence...tattgtatattggttgatgaacttgtaagtttaaacctttggagaaaattacaactgccatgattcaggattcctgttctgtgtgtgacttgtgttacagGTGGTCTTTACTGGAAAAATATAGCTGCAAAGCTTCAAAACTTCATCTGAAACCCCGGAGGTTTAAGATTTTCATAGAAGCCCTG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv08s0040g01460.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA16G23840.1 (Glycine max), 3'ss of exon 5
-tattgtatattggttgatgaacttgtaagtttaaacctttggagaaaattacaactgccatgattcaggattcctgttctgtgtgtgacttgtgttacagGTGGTCTTTACTGGAAAAATATAGCTGCAAAGCTTCAAAACTTCATCTGAAACCCCGGAGGTTTAAGATTTTCATAGAAGCCCTG
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tcatattatagtaatttcttgaataagaataggggtatattatgggagttttttgcattgaaagtttctcactagt-ttctcacttttacctgagacacagGTGGTCTTTATTAGAAAAGTATAGCTGCAAAGCCTCAAAGCTTCACCTGAAGCCCCGGAGATTTAAAATTTTTTTAGAAGCCTTG
upper sequence: Vv08s0040g01460.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA02G05420.1 (Glycine max), 3'ss of exon 5
tattgtatattggttgatgaacttgtaagtttaaacctttggagaaaattacaactgccatga-----ttcaggattcctg--ttctgtgtgtgacttgtgttacagGTGGTCTTTACTGGAAAAATATAGCTGCAAAGCTTCAAAACTTCATCTGAAACCCCGGAGGTTTAAGATTTTCATAGAAGCCCTG
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--tatcatatta--tggtaatttcttgaataagaa---taggggtatatcactattgttatgggagttttttgcgttgaaagtttctcacttttacatgtgacacagGTGGTCTTTATTAGAAAAGTATAGCTGCAAAGCCTCAAAGCTTCACCTGAAGCCCCGGAGATTTAAAATTTTTTTAGAAGCCTTG
upper sequence: Vv08s0040g01460.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: AT2G36960.3 (Arabidopsis thaliana), 3'ss of exon 5
---tattgtatattggttgatgaacttgtaagtttaaacctttggagaaaattacaactgccatgattcagg-attcctgttctgtgtgtgacttgtgttacagGTGGTCTTTACTGGAAAAATATAGCTGCAAAGCTTCAAAACTTCATCTGAAACCCCGGAGGTTTAAGATTTTCATAGAAGCCCTG
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tcttccattctcctagatgacatgatttcacatatcatgatcttaattatcactcagctcgtctgactaaagtaaacatgctttttc----atgtgtcttgcagGTGGTCTTTGCTTGAAAAGTATAGCTGCAAAGCTTCAAAACTTCATCTCAAGCCCCGGAGATTCAAACTATTTATAGAGGCCTTGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|28963174|gb|CB342207.1|CB342207EST: CAGGATTCTCTCTGGATGCAAAAAACTCTAAGGATACTAATGCTGCGATGCTGCGATG
genomic: CAGGATTCTCTCTGGATGCAAAAAACTCTAAGGATACTAATGCTGCGATGCTGCGATGgtaaccatta ... tgt
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
tattgtatattggttgatgaacttgtaagtttaaacctttggagaaaattacaactgccatgattcaggattcctgttctgtgtgtgacttgtgttacagGTGGTCTTTACTGGAAAAATATAGCTGCAAAGCTTCAAAACTTCATCTGAAACCCCGGAGGTTTAAGATTTTCATAGAAGCCCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - tggttga
- - - - - - - - - - - - - - - - - - - - ggagaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -ccatgat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gtgtgtg