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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaaggattcaacatgctactctctttagactacattttcagttagctgaatttgtctttttggccagGTAATATACTCAATTTCAATGTGGGGGCTTCAGTTGATTTAGACATTCCACGTAGTTTCTGGAGCCGTTTGGCTGGGAAGTATGGAAACATATTTTACTG

Basic information

species Vitis vinifera
transcript Vv08s0040g01400.t01
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv08s0040g01400.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA10G06430.1 (Glycine max), 3'ss of exon 4
gtaaaggattcaacatgctactctct-------ttagactacattttcagttagctgaatttgtct--------------ttttggccagGTAATATACTCAATTTCAATGTGGGGGCTTCAGTTGATTTAGACATTCCACGTAGTTTCTGGAGCCGTTTGGCTGGGAAGTATGGAAACATATTTTACTG
||||  ||  || ||  ||  ||| |       ||   || | |||    ||   |    || | |              || ||  |||| |||||| | ||||||||||| || ||| | |||||||| ||  | |||||||| || ||||  || ||||||||||||||||| ||||| || || ||
gtaagtgaaccatcacacttttctttgttacttttgttcttcctttgtgttttttttggcttctttaatatatgaagtggttctgagcagGCAATATATTGAATTTCAATGTTGGTGCTACGGTTGATTTGGATGTCCCACGTAGCTTTTGGAATCGCTTGGCTGGGAAGTATGGGAACATTTTCTATTG

upper sequence: Vv08s0040g01400.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: AT5G52970.1 (Arabidopsis thaliana), 3'ss of exon 4
gtaaaggattcaacat-gctactc---tctttagactacattttcagttagctgaatttg-----tctttttggc-cagGTAATATACTCAATTTCAATGTGGGGGCTTCAGTTGATTTAGACATTCCACGTAGTTTCTGGAGCCGTTTGGCTGGGAAGTATGGAAACATATTTTACTG
||||       ||| |   | ||    |  ||  | ||        |  | |||| | ||         |||| | |||| || ||| | ||||||||||| || ||| | |||||||||||||| || |||||||||||||| ||  |||||||||| || || || || ||||||||
gtaacaccccaaacctcattgcttaagttcttgaagtatccaaatgggaaactgattgtgataaccggatttgacacagGGAACATATTGAATTTCAATGTTGGAGCTACGGTTGATTTAGACATACCTCGTAGTTTCTGGAGTCGACTGGCTGGGAAATACGGCAATATGTTTTACTG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110689960|gb|EE066639.1|EE066639
EST:     TTGGCAAGTAGATGATAGAACTATTGTCTTTGTTGCTGATCCCACCTTTG                         GTAATATACTCAATTTCAATGTGGGGGCTTCAGTTGATTTAGACATTCCAC
genomic: TTGGCAAGTAGATGATAGAACTATTGTCTTTGTTGCTGATCCCACCTTTGgtaaaggatt ... ttttggccagGTAATATACTCAATTTCAATGTGGGGGCTTCAGTTGATTTAGACATTCCAC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atgctactctctttagactacattttcagttagctgaatttgtctttttggccagGTAATATACTCAATTTCAATGTGGGGGCTTCAGTTGATTTAGACATTCCACGTAGTTTCTGGAGCCGTTTGGCTGGGAAGTATGGAAACATATTTTACTG
                                      tttgtcttttt  CT-rich tract
                  tacatttt  TA-rich tract