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gtaagggaagaaccaaaaaaaaaccaaagaaaaataaccacttttgtatttaattcaggttttgctgattatcgagaaatgcaagtatcaattgaatttcttgtaacttttattgccagGCAATAACAATGAGGAGATACCAAGCTCACCTCTCACTCACATCGATTGTATGCTTTCTGGGCACACTACAATCCATTGCTGTTACATTTGTGATGGAGC
species | Vitis vinifera |
transcript | Vv08s0040g00800.t01 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TTCTCCTGATCATTGCTACTTTTGCCTGGGCATCTTTCTTCATCCTACAG GCAATAACAATGAGGAGATACCAAGCTCACCTCTCACTCACATCGATTGTAEST: gi|71875515|gb|DT024570.1|DT024570
genomic: TTCTCCTGATCATTGCTACTTTTGCCTGGGCATCTTTCTTCATCCTACAGgtaagggaag ... ttattgccagGCAATAACAATGAGGAGATACCAAGCTCACCTCTCACTCACATCGATTGTA
EST: TTCTCCTGATCATTGCTACTTTTGCCTGGGCATCTTTCTTCATCCTACAG GCAATAACAATGAGGAGATACCAAGCTCACCTCTCACTCACATCGATTGTA
genomic: TTCTCCTGATCATTGCTACTTTTGCCTGGGCATCTTTCTTCATCCTACAGgtaagggaag ... ttattgccagGCAATAACAATGAGGAGATACCAAGCTCACCTCTCACTCACATCGATTGTA
ctgattatcgagaaatgcaagtatcaattgaatttcttgtaacttttattgccagGCAATAACAATGAGGAGATACCAAGCTCACCTCTCACTCACATCGATTGTATGCTTTCTGGGCACACTACAATCCATTGCTGTTACATTTGTGATGGAGC
ttgtaac putative branch site (score: 2)
cttttatt CT-rich tract
tatcaattgaattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagggaagaaccaaaaaaaaaccaaagaaaaataaccacttttgtatttaattcaggttttgctgattatcgagaaatgcaagtatcaattgaatttcttgtaacttttattgccagGCAATAACAATGAGGAGATACCAAGCTCACCTCTCACTCACATCGATTGTATGCTTTCTGGGCACACTACAATCCATTGCTGTTACATTTGTGATGGAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA