Sequence
atgc intronic sequence ATGC exonic sequencegtaaccttctttctcaacttgctacttccattatttagaaactagatgtggatccaaacaaggccttatttgtgtgtttcttattacattctgcttcctgtctgtagttctaattcatacctagtccattctgatctttgcttttttcacagACAACTTATGAGAATTTCCGGTACCGCTATGATAAGAATAAAAATCCATATAATAAGGGGATACTGAAGAACTTCATAGAATTTGGTTTTGGGAAGATTC
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv08s0040g00370.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA03G27420.1 (Glycine max), 3'ss of exon 3
gtaaccttctttctcaacttgctacttccattatttagaaactagatgtggatccaaacaaggccttatttgtgtgtt-tcttattacattctgcttcctgtctgtagttctaat-tcatacctagtccattctgatctttgcttttttcacagACAACTTATGAGAATTTCCGGTACCGCTATGATAAGAATAAAAATCCATATAATAAGGGGATACTGAAGAACTTCATAGAATTTGGTTTTGGGAAGATTC
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--------------------------------------------------aatttgacc----ccctatgtgtgtcttatcatgtaaagtaccacatgacttatatattattaatattagactaactgttttttgacattttcttttgttttagACAACTTATGAGAATTTTCGGTACCGCTACGATAAGAAGGAAAATCCATTCACAAAAGGAATATGGACAAACTTCAAAGAACTTTCTTGTGCTAAGATCC
upper sequence: Vv08s0040g00370.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA19G30380.1 (Glycine max), 3'ss of exon 3
gtaaccttctttctcaacttgctacttccattatttagaaactagatgtggatccaaacaaggccttatttgtgtgtttcttattacattctgcttcctgtc-tgtagttctaattcatacctagtccattctgatctttgcttttttcacagACAACTTATGAGAATTTCCGGTACCGCTATGATAAGAATAAAAATCCATATAATAAGGGGATACTGAAGAACTTCATAGAATTTGGTTTTGGGAAGATTC
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----------------------------------------------------tttaaatttgaccc-atatgtttgtgtcttatcatgtaaagtaccacgtggcatattagtagtattagactaactctttttgacatgttcttttgtaatagACAACTTATGAGAATTTTCGGTACCGATATGATAAAAAGGAAAATCCATTCACAAAAGGAATATTGGCAAACTTCAAAGAACTTTCCTGTGCTAAGATCC
upper sequence: Vv08s0040g00370.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: AT5G05070.1 (Arabidopsis thaliana), 3'ss of exon 3
gtaaccttctttctcaacttgctacttccattatttagaaactagatgtggatccaaacaaggccttatttgtgtgtttcttattacattctgcttcctgtctgtagttctaattcatacctagtccattctgatctttgcttttttcacagACAACTTATGAGAATTTCCGGTACCGCTATGATAAGAATAAAAATCCATATAATAAGGGGATACTGAAGAACTTCATAGAATTTGGTTTTGGGAAGATTC
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---------------------------------------------------gtacattccttacctttatcataggaccacaactaaatctttttagcttgctttagcctt---------ctgagttttcttgtgttgtgtctgttttgcagACAACATATGAGAATTTCCGGTACCGTTATGATAAGAAAGAAAATCCTTACAAGAGAGGGTTACTGAAGAATGTTAAAGAAGTACTATTTGCCAAGATCC
upper sequence: Vv08s0040g00370.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: AT2G40990.1 (Arabidopsis thaliana), 3'ss of exon 4
gtaaccttctttctcaacttgctacttccattatttagaaactagatgtggatccaaacaaggccttatttgtgtgtttcttattacattctgcttcctgtctgtagttctaattcatacctagtccattctgatctttgcttttttcacagACAACTTATGAGAATTTCCGGTACCGCTATGATAAGAATAAAAATCCATATAATAAGGGGATACTGAAGAACTTCATAGAATTTGGTTTTGGGAAGATTC
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---------------------------------------------------------gcaagatcct--taacctttatttgactat-tgctgctctgt-tttgtgctataactttgcaaatttttgactct--tttgttactattttgcagACAACTTATGAGAATTTCCGGTATCGGTATGACAAGAAAGAAAACCCTTATGGAAAGGGTCTCTTCAAGAACCTATATGAGTTGTTCTTTGCCAGAATTC atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ctgtctgtagttctaattcatacctagtccattctgatctttgcttttttcacagACAACTTATGAGAATTTCCGGTACCGCTATGATAAGAATAAAAATCCATATAATAAGGGGATACTGAAGAACTTCATAGAATTTGGTTTTGGGAAGATTC
tctttgcttttttcac CT-rich tract
taattcata TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtaaccttctttctcaacttgctacttccattatttagaaactagatgtggatccaaacaaggccttatttgtgtgtttcttattacattctgcttcctgtctgtagttctaattcatacctagtccattctgatctttgcttttttcacagACAACTTATGAGAATTTCCGGTACCGCTATGATAAGAATAAAAATCCATATAATAAGGGGATACTGAAGAACTTCATAGAATTTGGTTTTGGGAAGATTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA