Sequence
atgc intronic sequence ATGC exonic sequence...gctttataaattatggctttggatatgtcaaaatttatctttgttgtttctatatggactgtatgaagtaattattgggattgtcttggctggattgcagATCCAGAGGCTAAGTGGAGTGGATTCTGATTTTGCTCCACTTTTGCAACATGCAGGGGTTCCTTCTGTTGATTTATACTATGGAAGAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv08s0032g00670.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA10G11100.1 (Glycine max), 3'ss of exon 5
-----gctttataaattatggctttggatatgtcaaaatttatctttgttgtttctatatggactgtatgaagtaattattgggattgtcttggctggattgcagATCCAGAGGCTAAGTGGAGTGGATTCTGATTTTGCTCCACTTTTGCAACATGCAGGGGTTCCTTCTGTTGATTTATACTATGGAAGAG
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ttgaaagtaagaaaaatacaattt---atctttcaaaataaatcaatggtgatgaaagatcacatatttgttgct-tagcaggttttatcttggttg-attgcagATTCAAAGGCTCAGTGGTGTTGATTCTGATTTCGCTCCATTTGTGCAACATGCAGGGGTTCCATCTGTTGATGTATATTATGGAAAAG
upper sequence: Vv08s0032g00670.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA03G36430.1 (Glycine max), 3'ss of exon 4
gctttataaattatggctttggatatgtcaaaatttatctttgttgtttctatat-ggactgtatgaagtaattattgggattgtcttggctggattgcagATCCAGAGGCTAAGTGGAGTGGATTCTGATTTTGCTCCACTTTTGCAACATGCAGGGGTTCCTTCTGTTGATTTATACTATGGAAGAG
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-tatgataatgttgggtttttgccatgcttttttcaaactgggtttcaattttgttgtgatgtcttcattgcttagccacttttattttattggattgcagATTCAGAGGCTCAGTGGAGTTGATTCTGATTTCGCTCCATTTGTGCAACACGCAGGGGTTCCATCCATTGATATGTATTATGGAAGAG
upper sequence: Vv08s0032g00670.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA19G39080.1 (Glycine max), 3'ss of exon 4
gctttataaattatggctttggatatgtcaaaatttatctttgttg-tttctatatggactgtatgaagtaattattgggattgtcttggct---ggattgcagATCCAGAGGCTAAGTGGAGTGGATTCTGATTTTGCTCCACTTTTGCAACATGCAGGGGTTCCTTCTGTTGATTTATACTATGGAAGAG
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-tattataa-taatg--tctgtttttcccattttttttcaaagtgggtttcaactttgtcgtggtatcctcattgctaagccacttttgttttgttggttgcagATTCAGAGGCTCAGTGGAGTAGATTCCGATTTTGCTCCATTTGTGCAACACGCAGGGGTTCCATCCATTGACATGTATTATGGAAGAG
upper sequence: Vv08s0032g00670.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA12G23220.1 (Glycine max), 3'ss of exon 4
gctttataa----attatggc--tttggatatgtcaaaatttatcttt-gttgtttctatatggactgtatgaagtaattattgggattgtcttggctggattgcagATCCAGAGGCTAAGTGGAGTGGATTCTGATTTTGCTCCACTTTTGCAACATGCAGGGGTTCCTTCTGTT--GATTTATACTATGGAAGAG----
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---ttatagccgtattatgataatgtgtttttgccatgctttttccaaagtgggtttcaattttgttgttctatttggtagccacttttgt-ttgattg---cgcagATTCAAAGGCTCAGTGGAGTTGATTCTGATTTTGCTCCATTTGTGCAGCACGCAGGGGTTCCATTCATTTTGATATGTATTATGGAAGAGTTAT
upper sequence: Vv08s0032g00670.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: AT3G54720.1 (Arabidopsis thaliana), 3'ss of exon 4
gctttataaattatggctttggatatgtcaaaatttatctttgttgtttctatatggactgtatgaagtaattattgggattgtcttggctggattgcagATCCAGAGGCTAAGTGGAGTGGATTCTGATTTTGCTCCACTTTTGCAACATGCAGGGGTTCCTTCTGTTGATTTATACTATGGAAGAG
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------------------------gtgagtagactattcaaaagagctcatacattgtctttgtaatgtaaaactatgtaatgttttaa-tgaactgcagATTCAGAGGCTAAGTAGAGTAGATTCTGATTTTTCCGGTTTTCTTCATCATGCCGGGATACCGTCTATAGACATGTACTATGGAGCAGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110377414|gb|EC942476.1|EC942476EST: AGAGCATGACCATATATGATAACTGGATGATTACAAATAAAGTCATCAAT ATCCAGAGGCTAAGTGGAGTGGATTCTGATTTTGCTCCACTTTTGCAACAT
genomic: AGAGCATGACCATATATGATAACTGGATGATTACAAATAAAGTCATCAATgtaagttaac ... tggattgcagATCCAGAGGCTAAGTGGAGTGGATTCTGATTTTGCTCCACTTTTGCAACAT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gtttctatatggactgtatgaagtaattattgggattgtcttggctggattgcagATCCAGAGGCTAAGTGGAGTGGATTCTGATTTTGCTCCACTTTTGCAACATGCAGGGGTTCCTTCTGTTGATTTATACTATGGAAGAG
tatgaagtaattatt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gctttataaattatggctttggatatgtcaaaatttatctttgttgtttctatatggactgtatgaagtaattattgggattgtcttggctggattgcagATCCAGAGGCTAAGTGGAGTGGATTCTGATTTTGCTCCACTTTTGCAACATGCAGGGGTTCCTTCTGTTGATTTATACTATGGAAGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - -tatggct
- - - - - - - - - - - - - -tcaaaat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctgtatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgtcttg