1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...attttgttgtatgatttttattttttattaccgtgattgtacttgtagtcatccatttatcttatatttatgtcctcctcgcacacgggccatttttcagTCAGTGTCAGCATTTGCACCAATTGTGAATCCTATGAACTGTCCCTGGGGCCAGAAAGCTTTCACAAACTATCTAGGAGGCAATAAGGCAGATTGGGAG
species | Vitis vinifera |
transcript | Vv08s0007g09010.t01 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GCGGGCATGGAGCTCTGACAATCTACCTGAAAAATCTGGACAAGTATAAG TCAGTGTCAGCATTTGCACCAATTGTGAATCCTATGAACTGTCCCTGGGGCEST: gi|110687388|gb|EE064765.1|EE064765
genomic: GCGGGCATGGAGCTCTGACAATCTACCTGAAAAATCTGGACAAGTATAAGgtgcctaagc ... catttttcagTCAGTGTCAGCATTTGCACCAATTGTGAATCCTATGAACTGTCCCTGGGGC
EST: GCGGGCATGGAGCTCTGACAATCTACCTGAAAAATCTGGACAAGTATAAG TCAGTGTCAGCATTTGCACCAATTGTGAATCCTATGAACTGTCCCTGGGGCEST: gi|34550413|gb|CF518631.1|CF518631
genomic: GCGGGCATGGAGCTCTGACAATCTACCTGAAAAATCTGGACAAGTATAAGgtgcctaagc ... catttttcagTCAGTGTCAGCATTTGCACCAATTGTGAATCCTATGAACTGTCCCTGGGGC
EST: GCGGGCATGGAGCTCTGACAATCTACCTGAAAAATCTGGACAAGTATAAG TCAGTGTCAGCATTTGCACCAATTGTGAATCCTATGAACTGTCCCTGGGGCEST: gi|34550493|gb|CF518711.1|CF518711
genomic: GCGGGCATGGAGCTCTGACAATCTACCTGAAAAATCTGGACAAGTATAAGgtgcctaagc ... catttttcagTCAGTGTCAGCATTTGCACCAATTGTGAATCCTATGAACTGTCCCTGGGGC
EST: GCGGGCATGGAGCTCTGACAATCTACCTGAAAAATCTGGACAAGTATAAG TCAGTGTCAGCATTTGCACCAATTGTGAATCCTATGAACTGTCCCTGGGGCEST: gi|110719520|gb|EE094721.1|EE094721
genomic: GCGGGCATGGAGCTCTGACAATCTACCTGAAAAATCTGGACAAGTATAAGgtgcctaagc ... catttttcagTCAGTGTCAGCATTTGCACCAATTGTGAATCCTATGAACTGTCCCTGGGGC
EST: GCGGGCATGGAGCTCTGACAATCTACCTGAAAAATCTGGACAAGTATAAG TCAGTGTCAGCATTTGCACCAATTGTGAATCCTATGAACTGTCCCTGGGGCEST: gi|110720771|gb|EE096986.1|EE096986
genomic: GCGGGCATGGAGCTCTGACAATCTACCTGAAAAATCTGGACAAGTATAAGgtgcctaagc ... catttttcagTCAGTGTCAGCATTTGCACCAATTGTGAATCCTATGAACTGTCCCTGGGGC
EST: GCGGGCATGGAGCTCTGACAATCTACCTGAAAAATCTGGACAAGTATAAG TCAGTGTCAGCATTTGCACCAATTGTGAATCCTATGAACTGTCCCTGGGGCEST: gi|30303302|gb|CB980096.1|CB980096
genomic: GCGGGCATGGAGCTCTGACAATCTACCTGAAAAATCTGGACAAGTATAAGgtgcctaagc ... catttttcagTCAGTGTCAGCATTTGCACCAATTGTGAATCCTATGAACTGTCCCTGGGGC
EST: GCGGGCATGGAGCTCTGTCAATCTACCTGAAAAATCTGGACAAGTATAAG TCAGTGTCAGCATTTGCACCAATTGTGAATCCTATGAACTGTCCCTGGGGCEST: gi|349825963|gb|FQ415768.1|FQ415768
genomic: GCGGGCATGGAGCTCTGACAATCTACCTGAAAAATCTGGACAAGTATAAGgtgcctaagc ... catttttcagTCAGTGTCAGCATTTGCACCAATTGTGAATCCTATGAACTGTCCCTGGGGC
EST: GCGGGCATGGAGCTCTGACAATCTACCTGAAAAATCTGGACAAGTATAAG TCAGTGTCAGCATTTGCACCAATTGTGAATCCTATGAACTGTCCCTGGGGCEST: gi|294966328|gb|GW837579.1|GW837579
genomic: GCGGGCATGGAGCTCTGACAATCTACCTGAAAAATCTGGACAAGTATAAGgtgcctaagc ... catttttcagTCAGTGTCAGCATTTGCACCAATTGTGAATCCTATGAACTGTCCCTGGGGC
EST: GCGGGCATGGAGCTCTGACAATCTACCTGAAAAATCTGGACAAGTATAAG TCAGTGTCAGCATTTGCACCAATTGTGAATCCTAT-AACTGTCC-TGGGGCEST: gi|110367745|gb|EC931696.1|EC931696
genomic: GCGGGCATGGAGCTCTGACAATCTACCTGAAAAATCTGGACAAGTATAAGgtgcctaagc ... catttttcagTCAGTGTCAGCATTTGCACCAATTGTGAATCCTATGAACTGTCCCTGGGGC
EST: GCGGGCATGGAGCTCTGACAATCTACCTGAAAAATCTGGACAAGTATAAG TCAGTGTCAGCATTTGCACCAATTGTGAATCCTATGAACTGTCCCTGGGGCEST: gi|110713210|gb|EE088932.1|EE088932
genomic: GCGGGCATGGAGCTCTGACAATCTACCTGAAAAATCTGGACAAGTATAAGgtgcctaagc ... catttttcagTCAGTGTCAGCATTTGCACCAATTGTGAATCCTATGAACTGTCCCTGGGGC
EST: GCGGGCATGGAGCTCTGACAATCTACCTGAAAAATCTGGACAAGTATAAG TCAGTGTCAGCATTTGCACCAATTGTGAATCCTATGAACTGTCCCTGGGGCEST: gi|110685290|gb|EE063541.1|EE063541
genomic: GCGGGCATGGAGCTCTGACAATCTACCTGAAAAATCTGGACAAGTATAAGgtgcctaagc ... catttttcagTCAGTGTCAGCATTTGCACCAATTGTGAATCCTATGAACTGTCCCTGGGGC
EST: GCGGGCATGGAGCTCTGACAATCTACCTGAAAAATCTGGACAAGTATAAG TCAGTGTCAGCATTTGCACCAATTGTGAATCCTATGAACTGTCCCTGGGGCEST: gi|351015480|gb|FQ447309.1|FQ447309
genomic: GCGGGCATGGAGCTCTGACAATCTACCTGAAAAATCTGGACAAGTATAAGgtgcctaagc ... catttttcagTCAGTGTCAGCATTTGCACCAATTGTGAATCCTATGAACTGTCCCTGGGGC
EST: G-GGGCATGGAGCTCTGACAATCTACCTGAAAAATCTGGACAAGTATAAG TCAGTGTCAGCATTTGCACCAATTGTGAATCCTATGAACTGTCCCTGGGGCEST: gi|46918518|gb|CN547847.1|CN547847
genomic: GCGGGCATGGAGCTCTGACAATCTACCTGAAAAATCTGGACAAGTATAAGgtgcctaagc ... catttttcagTCAGTGTCAGCATTTGCACCAATTGTGAATCCTATGAACTGTCCCTGGGGC
EST: ACAAGTATGAG TCAGTGTCAGCATTTGCACCAATTGTGAATCCTATGAACTGTCCCTGGGGCEST: gi|110403744|gb|EC969476.1|EC969476
genomic: ACAAGTATAAGgtgcctaagc ... catttttcagTCAGTGTCAGCATTTGCACCAATTGTGAATCCTATGAACTGTCCCTGGGGC
EST: GCGGGCATGGAGCTCTGACAATCTACCTGAAAAATCTGGACAAGTATAAG TCAGTGTCAGCATTTGCACCAATTGTGAATCCTATGAACTGTCCCTGGGGCEST: gi|110707831|gb|EE084680.1|EE084680
genomic: GCGGGCATGGAGCTCTGACAATCTACCTGAAAAATCTGGACAAGTATAAGgtgcctaagc ... catttttcagTCAGTGTCAGCATTTGCACCAATTGTGAATCCTATGAACTGTCCCTGGGGC
EST: GCGGGCATGGAGCTCTGACAATCTACCTGAAAAATCTGGACAAGTATAAG TCAATGTCAGCATTTGCACCAATTGTGAATCCTATGAACTGTCCCTGGGGCEST: gi|110720121|gb|EE095776.1|EE095776
genomic: GCGGGCATGGAGCTCTGACAATCTACCTGAAAAATCTGGACAAGTATAAGgtgcctaagc ... catttttcagTCAGTGTCAGCATTTGCACCAATTGTGAATCCTATGAACTGTCCCTGGGGC
EST: GCGGGCATGGAGCTCTGACAATCTACCTGAAAAATCTGGACAAGTATAAG TCAGTGTCAGCATTTGCACCAATTGTGAATCCTATGAACTGTCCCTGGGGCEST: gi|351013248|gb|FQ424953.1|FQ424953
genomic: GCGGGCATGGAGCTCTGACAATCTACCTGAAAAATCTGGACAAGTATAAGgtgcctaagc ... catttttcagTCAGTGTCAGCATTTGCACCAATTGTGAATCCTATGAACTGTCCCTGGGGC
EST: GCGGGCATGGAGCTCTGACAATCTACCTGAAAAATCTGGACAAGTATAAG TCAGTGTCAGCATTTGCACCAATTGTGAATCCTATGAACTGTCCCTGGGGCEST: gi|110384036|gb|EC948449.1|EC948449
genomic: GCGGGCATGGAGCTCTGACAATCTACCTGAAAAATCTGGACAAGTATAAGgtgcctaagc ... catttttcagTCAGTGTCAGCATTTGCACCAATTGTGAATCCTATGAACTGTCCCTGGGGC
EST: GCGGGCATGGAGCTCTGACAATCTACCTGAAAAATCTGGACAAGTATAAG TCAGTGTCAGCATTTGCACCAATTGTGAATCCTATGAACTGTCCCTGGGGCEST: gi|30303234|gb|CB980028.1|CB980028
genomic: GCGGGCATGGAGCTCTGACAATCTACCTGAAAAATCTGGACAAGTATAAGgtgcctaagc ... catttttcagTCAGTGTCAGCATTTGCACCAATTGTGAATCCTATGAACTGTCCCTGGGGC
EST: GCGGGCATGGAGCTCTGACAATCTACCTGAAAAATCTGGACAAGTATAAG TCAGTGTCAGCATTTGCACCAATTGTGAATCCTATGAACTGTCCCTGGGGCEST: gi|110416702|gb|EC982699.1|EC982699
genomic: GCGGGCATGGAGCTCTGACAATCTACCTGAAAAATCTGGACAAGTATAAGgtgcctaagc ... catttttcagTCAGTGTCAGCATTTGCACCAATTGTGAATCCTATGAACTGTCCCTGGGGC
EST: GCGGGCATGGAGCTCTGACAATCTACCTGAAAAATCTGGACAAGTATAAG TCAGTGTCAGCATTTGCACCAATTGTGAATCCTATGAACTGTCCCTGGGGCEST: gi|30129940|gb|CB915279.1|CB915279
genomic: GCGGGCATGGAGCTCTGACAATCTACCTGAAAAATCTGGACAAGTATAAGgtgcctaagc ... catttttcagTCAGTGTCAGCATTTGCACCAATTGTGAATCCTATGAACTGTCCCTGGGGC
EST: GCGGGCATGGAGCTCTGACAATCTACCTGAAAAATCTGGACAAGTATAAG TCAGTGTCAGCATTTGCACCAATTGTGAATCCTATGAACTGTCCCTGGGGCEST: gi|26263619|gb|CA814682.1|CA814682
genomic: GCGGGCATGGAGCTCTGACAATCTACCTGAAAAATCTGGACAAGTATAAGgtgcctaagc ... catttttcagTCAGTGTCAGCATTTGCACCAATTGTGAATCCTATGAACTGTCCCTGGGGC
EST: CAATCTACCTGAAAAATCTGGACAAGTATAAG TCAGTGTCAGCATTTGCACCAATTGTGAATCCTATGAACTGTCCCTGGGGCEST: gi|110402055|gb|EC968688.1|EC968688
genomic: CAATCTACCTGAAAAATCTGGACAAGTATAAGgtgcctaagc ... catttttcagTCAGTGTCAGCATTTGCACCAATTGTGAATCCTATGAACTGTCCCTGGGGC
EST: GCGGGCATGGAGCTCTGACAATCTACCTGAAAAATCTGGACAAGTATAAG TCAGTGTCAGCATTTGCACCAATTGTGAATCCTATGAACTGTCCCTGGGGCEST: gi|161715442|gb|FC069433.1|FC069433
genomic: GCGGGCATGGAGCTCTGACAATCTACCTGAAAAATCTGGACAAGTATAAGgtgcctaagc ... catttttcagTCAGTGTCAGCATTTGCACCAATTGTGAATCCTATGAACTGTCCCTGGGGC
EST: -CGGGCATGGAGCTCTGACAATCTACCTGAAAAATCTGGACAAGTATAAG TCAGTGTCAGCATTTGCACCAATTGTGAATCCTATGAACTGTCCCTEST: gi|352794409|gb|FQ481640.1|FQ481640
genomic: GCGGGCATGGAGCTCTGACAATCTACCTGAAAAATCTGGACAAGTATAAGgtgcctaagc ... catttttcagTCAGTGTCAGCATTTGCACCAATTGTGAATCCTATGAACTGTCCCT
EST: GCGGGCATGGAGCTCTGACAATCTACCTGAAAAATCTGGACAAGTATAAG TCAGTGTCAGCATTTGCACCAATTGTGAATCCTATGAACTGTCCCTGGGGCEST: gi|351040136|gb|FQ425222.1|FQ425222
genomic: GCGGGCATGGAGCTCTGACAATCTACCTGAAAAATCTGGACAAGTATAAGgtgcctaagc ... catttttcagTCAGTGTCAGCATTTGCACCAATTGTGAATCCTATGAACTGTCCCTGGGGC
EST: GCGGGCATGGAGCTCTGACAATCTACCTGAAAAATCTGGACAAGTATAAG TCAGTGTCAGCATTTGCACCAATTGTGAATCCTATGAACTGTCCCTGGGGCEST: gi|37190457|gb|CF609806.1|CF609806
genomic: GCGGGCATGGAGCTCTGACAATCTACCTGAAAAATCTGGACAAGTATAAGgtgcctaagc ... catttttcagTCAGTGTCAGCATTTGCACCAATTGTGAATCCTATGAACTGTCCCTGGGGC
EST: GCGGTCATGGAGCTCTGACAATCTACCTGAAAAATCTGGACTAGTATAAG TCAGTGTCAGCATTTGCACCAATTGTGAATCCTATGAACTGTCCCTGGGGCEST: gi|351027863|gb|FQ448433.1|FQ448433
genomic: GCGGGCATGGAGCTCTGACAATCTACCTGAAAAATCTGGACAAGTATAAGgtgcctaagc ... catttttcagTCAGTGTCAGCATTTGCACCAATTGTGAATCCTATGAACTGTCCCTGGGGC
EST: GCGGGCATGGAGCTCTGACAATCTACCTGAAAAATCTGGACAAGTATAAG TCAGTGTCAGCATTTGCACCAATTGTGAATCCTATGAACTGTCCCTGGGGCEST: gi|34319644|gb|CF372398.1|CF372398
genomic: GCGGGCATGGAGCTCTGACAATCTACCTGAAAAATCTGGACAAGTATAAGgtgcctaagc ... catttttcagTCAGTGTCAGCATTTGCACCAATTGTGAATCCTATGAACTGTCCCTGGGGC
EST: CGGGCATGGAGCTCTGACAATCTACCTG-AAAATCCTGGACAAGTATAAG TCAGTGTCAGCATTTGCACCAATTGTGAATCCTATGAACTGTCCCTGGGGCEST: gi|161718850|gb|FC066651.1|FC066651
genomic: CGGGCATGGAGCTCTGACAATCTACCTGAAAAAT-CTGGACAAGTATAAGgtgcctaagc ... catttttcagTCAGTGTCAGCATTTGCACCAATTGTGAATCCTATGAACTGTCCCTGGGGC
EST: GCGGGCATGGAGCTCTGACAATCTACCTGAAAAATCTGGACAAGTATAAG TCAGTGTCAGCATTTGCACCAATTGTGAATCCTATGAACTGTCCCTGGGGCEST: gi|349824260|gb|FQ417647.1|FQ417647
genomic: GCGGGCATGGAGCTCTGACAATCTACCTGAAAAATCTGGACAAGTATAAGgtgcctaagc ... catttttcagTCAGTGTCAGCATTTGCACCAATTGTGAATCCTATGAACTGTCCCTGGGGC
EST: GCGGGCATGGAGCTCTGACAATCTACCTGAAAAATCTGGACAAGTATAAG TCAGTGTCAGCATTTGCACCAATTGTGAATCCTATGAACTGTCCCTGGGGCEST: gi|161717616|gb|FC065629.1|FC065629
genomic: GCGGGCATGGAGCTCTGACAATCTACCTGAAAAATCTGGACAAGTATAAGgtgcctaagc ... catttttcagTCAGTGTCAGCATTTGCACCAATTGTGAATCCTATGAACTGTCCCTGGGGC
EST: GCGGGCATGGAGCTCTGACAATCTACCTGACAAATCTGGACAAGTATAAG TCAGTGTCAGCATTTGCACCAATTGTGAATCCTATGAACTGTCCCTGGGGC
genomic: GCGGGCATGGAGCTCTGACAATCTACCTGAAAAATCTGGACAAGTATAAGgtgcctaagc ... catttttcagTCAGTGTCAGCATTTGCACCAATTGTGAATCCTATGAACTGTCCCTGGGGC
tagtcatccatttatcttatatttatgtcctcctcgcacacgggccatttttcagTCAGTGTCAGCATTTGCACCAATTGTGAATCCTATGAACTGTCCCTGGGGCCAGAAAGCTTTCACAAACTATCTAGGAGGCAATAAGGCAGATTGGGAG
ccatttttc CT-rich tract
atccatttatcttata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| attttgttgtatgatttttattttttattaccgtgattgtacttgtagtcatccatttatcttatatttatgtcctcctcgcacacgggccatttttcagTCAGTGTCAGCATTTGCACCAATTGTGAATCCTATGAACTGTCCCTGGGGCCAGAAAGCTTTCACAAACTATCTAGGAGGCAATAAGGCAGATTGGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - tcatcca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gcacacg