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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatttcctggttttttattaaaattgagcagcctcgatttttgacaaatccgatgccataatgtgtgtttggtgttgatattggatgttcagGGAACTTGCATCACAAGGCATTCTTCAAGCATTAAGAGATGAAACCTTGAACGATCCCAGGGAAAGGATTGAGATTGCACAGACTCATGCTTTCTACAGG

Basic information

species Vitis vinifera
transcript Vv08s0007g09000.t01
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv08s0007g09000.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: AT2G41540.1 (Arabidopsis thaliana), 3'ss of exon 6
-------------------------------------------------------------------------------------------------gtatttcctggttttttattaaaattgagcagcctcgatttttgacaaatccgatgcca-taatgtgtgtttgg--tgttgatattggatgtt-cagGGAACTTGCATCACAAGGCATTCTTCAAGCATTAAGAGATGAAACCTTGAACGATCCCAGGGAAAGGATTGAGATTGCACAGACTCATGCTTTCTACAGG
                                                                                                    ||||  |  | | |    |  ||| |   | || | |      |||   | | |   || | | |  |     ||||| | ||  || || ||| ||||   || | || | |||||| ||||||||||| ||||| || |||||||||||||| ||  | ||||||||||||||||  ||||| |||||||||
gtagataatatgaagtctgaaaagtttatacttctccaaaaaatattgaactttgctcagtcagatttggtgtgacatgatgggaagttagatatctagttttcaagaatgtcttgggactttgtgagacatcaaatcacttgaaacttgcttcttctattatctaataaaattgttgttgttctattttgcagAGAACAATCAACTCAGGCCATTCTGCAAGCATTAAGGGATGAGACATTGAACGATCCCAGAGACCGTATTGAGATTGCACAGAGCCATGCATTCTACAGG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttttgacaaatccgatgccataatgtgtgtttggtgttgatattggatgttcagGGAACTTGCATCACAAGGCATTCTTCAAGCATTAAGAGATGAAACCTTGAACGATCCCAGGGAAAGGATTGAGATTGCACAGACTCATGCTTTCTACAGG
                                     ttgatatt  TA-rich tract