Sequence
atgc intronic sequence ATGC exonic sequencegttaattatcatcaactgcttattttcttttctttttggttccctgttcacattacttttatatggtatcaacagatttcgtttgttctcagCTATAGAATTCTACATGCCTCCAATTTGTTCTCCACTTGTCAGGCCTGGCAGGCCAGCTGAGGAAGCTCCAGTTGTTTCAAAGCAATTATCTGACACTAT
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv08s0007g08550.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA08G27080.1 (Glycine max), 3'ss of exon 4
gttaattatcatcaactg--cttattttctttt--ctttttggttccctgttcacat-tacttttatatggtatcaacagatttcgtttgttctcagCTATAGAATTCTACATGCCTCCAATTTGTTCTCCACTTGTCAGGCCTGGCAGGCCAGCTGAGGAAGCTCCAGTTGTTTCAAAGCAATTATCTGACACTAT
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gttagcttttacttgctgggctacttatgtgttagttattaaatcttctgctcgcatatgccatgaaattaacttctta-atatctattatt-tcagCTATTGATTTCCACATGCCTCCAATTTGTTCTCCAATAGTTAGGCCTGGCAGGCCAGCTGAAGCATCACCGGTGGTGTCAAAGCAGTTGTCTGACACCAT
upper sequence: Vv08s0007g08550.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA14G22250.2 (Glycine max), 3'ss of exon 4
gttaattatca-tcaactgcttattt--tcttttctttttggttccctgttcacattacttttatatggtatcaacagatttcgtttgttctcagCTATAGAATTCTACATGCCTCCAATTTGTTCTCCACTTGTCAGGCCTGGCAGGCCAGCTGAGGAAGCTCCAGTTGTTTCAAAGCAATTATCTGACACTAT
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gttggctatcactcaatgtgccacttaattgttagttattaagtctttttgctcactggccataaaattaacatgttaatatctgttatt-tcagCTATTGATTTCCACATGCCTCCAATTTGTTCTCCGATTGTTAGGCCTGGCAGGCCTGCTGAAGCATCACCGGTGGTATCAAAGCAGTTGTCTGACACCAT
upper sequence: Vv08s0007g08550.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA18G50270.1 (Glycine max), 3'ss of exon 3
gttaattatcatcaactgcttattttcttttctttttggttccctgttcacattacttttatatggtatcaacagattt-cgtttgt--tctcagCTATAGAATTCTACATGCCTCCAATTTGTTCTCCACTTGTCAGGCCTGGCAGGCCAGCTGAGGAAGCTCCAGTTGTTTCAAAGCAATTATCTGACACTAT
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--------------------------gttagttatttagtcttctgctcacatatgccataaaattaactaacatgttaatatttgttatttcagCTATTGATTTCCACATGCCTCCAATTTGTTCTCCAATCGTTAGGCCTGGCAGACCAGCTGAAGCATCACCGATGGTGTCAAAGCAGTTGTCTAACACCAT atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ggttccctgttcacattacttttatatggtatcaacagatttcgtttgttctcagCTATAGAATTCTACATGCCTCCAATTTGTTCTCCACTTGTCAGGCCTGGCAGGCCAGCTGAGGAAGCTCCAGTTGTTTCAAAGCAATTATCTGACACTAT
tttcgtttgttctc CT-rich tract
acattacttttatat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gttaattatcatcaactgcttattttcttttctttttggttccctgttcacattacttttatatggtatcaacagatttcgtttgttctcagCTATAGAATTCTACATGCCTCCAATTTGTTCTCCACTTGTCAGGCCTGGCAGGCCAGCTGAGGAAGCTCCAGTTGTTTCAAAGCAATTATCTGACACTAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA