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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtcatatcattttgccttattatggaaaatttctgatttcacgtaatcctcctatttattttcagactggaaagatgacatgtgaacacttgcattggtagcagGTTACTGAGGCAGATATTGAAGAGTTTGAAGCAAACTACAGAGGATCTGATTCAGAGAAGAATGATTTGATTGACCTGTACAAAAAGTGCAAGGGTAATA

Basic information

species Vitis vinifera
transcript Vv08s0007g07960.t01
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv08s0007g07960.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: LOC_Os02g10220.1 (Oryza sativa), 3'ss of exon 4
gtcatatcattttgccttattatggaaaatttctgatttcacgtaatcctcctatttattttcagactggaaagatgacatgtgaacacttgcattggtagcagGTTACTGAGGCAGATATTGAAGAGTTTGAAGCAAACTACAGAGGATCTGATTCAGAGAAGAATGATTTGATTGACCTGTACAAAAAGTGCAAGGGTAATA
    |||| |||||    ||      |||      |  |   |  |||     |  |||            |  ||||   ||||  || | || |  | ||||||||||||||| ||||||||||| |||||||| || |||||||| || ||||| || || || || ||||  || || || | ||| |  || || || |
---gtatctttttggtccatatcaacaaaa----aaacttgtgctatctgttcacctat------------acaatgatcggtgatgacctacacttct-gcagGTTACTGAGGCTGATATTGAAGAATTTGAAGCTAAGTACAGAGGGTCAGATTCTGAAAAAAAGGACTTGAAGGATCTATATACAAAATTTAAAGGCAACA

upper sequence: Vv08s0007g07960.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA02G31080.1 (Glycine max), 3'ss of exon 4
gtcatatcattttgccttattatggaaaatttctgatttcacgtaat--cctcctatttattttcagactggaaagatgacatgtgaacacttgcattggtagcagGTTACTGAGGCAGATATTGAAGAGTTTGAAGCAAACTACAGAGGATCTGATTCAGAGAAGAATGATTTGATTGACCTGTACAAAAAGTGCAAGGGTAATA
                      |   |   | |   |||| |  |||  | |    | || ||     |||   || ||| || |    |  |    || ||  |||| ||||| || |||||||| ||||||||||||||||| || || ||||| || ||||| |||||||||||||| |||||||| ||||||||||||||||
---------------------gtaacatgatccctttttctcccaatgccttatggtatacttgtcatctgtgtagctgatatattgtaatata---tgctaatagGTCACTGAAGCTGATATTGAGGAGTTTGAAGCAAACTATAGGGGGTCTGACTCTGAGAAAAATGATTTGATTGATCTGTACAAGAAGTGCAAGGGTAATA

upper sequence: Vv08s0007g07960.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA19G32480.1 (Glycine max), 3'ss of exon 4
gtcatatcattttgccttattatggaaaatttctgatttcacgtaatcctcctatttattttcagactggaaagatgacatgtg-aacacttgcattg-gtagcagGTTACTGAGGCAGATATTGAAGAGTTTGAAGCAAACTACAGAGGATCTGATTCAGAGAAGAATGATTTGATTGACCTGTACAAAAAGTGCAAGGGTAATA
          ||||  ||| |||   | || |   |||        |  ||  ||  ||| |   |       | | |  | ||     |||  | || |   ||||| ||||| || |||||||| |||||||||||||||||  | |||||||| |||||||| ||||||||||||||  ||||||| |||||||||||||| |
-------gtatttgttttaatatatgatatatggtattctg-----ttttctaatccattgtggtatatttgtgttcatttatgtggtgcttaaaatgtgctacagGTGACTGAAGCTGATATTGAGGAGTTTGAAGCAAACTATCGGGGATCTGACTCAGAGAAAAATGATTTGATTGATTTGTACAAGAAGTGCAAGGGTAACA

upper sequence: Vv08s0007g07960.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA10G12350.1 (Glycine max), 3'ss of exon 4
gtcatatcattttgccttattatggaaaatttctgatt-tcacgtaatcctcctatttattttcagactggaaagatgacatgtgaacacttgcattggtagcagGTTACTGAGGCAGATATTGAAGAGTTTGAAGCAAACTACAGAGGATCTGATTCAGAGAAGAATGATTTGATTGACCTGTACAAAAAGTGCAAGGGTAATA
                      |  |  ||  ||  || || |     | |   || || ||  |  |||   || ||| || |    |  |    |   |  |||| ||||| || |||||||| || |||||||||||||| || || |||||    ||||| |||||||||||||| |||||||| |||||||| |||||||
---------------------gtacatgatccctttttctcccaatgccttgtgatatacttgtaatctgtgtagctgatatattgtaatatatgcta--aatagGTCACTGAAGCTGATATTGAGGAATTTGAAGCAAACTATAGGGGGTCTGACATTGAGAAAAATGATTTGATTGATCTGTACAAGAAGTGCAACGGTAATA

upper sequence: Vv08s0007g07960.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: AT5G06910.1 (Arabidopsis thaliana), 3'ss of exon 4
gtcatatcattttgccttattatggaaaatttctgatttcacgtaatcctcctatttattttcagactggaaagatgacatgtgaacacttgcattggtagcagGTTACTGAGGCAGATATTGAAGAGTTTGAAGCAAACTACAGAGGATCTGATTCAGAGAAGAATGATTTGATTGACCTGTACAAAAAGTGCAAGGGTAATA
    || ||       | | ||  || |  || |     ||  |  | || ||  |||   | |   |       ||   |||     |||  ||       |||| |  || || ||||||||||||||||| ||||||||||| |||||||| ||||||||||| || ||| |||| || | ||| ||||  |||||||| |
---gtagcagaaactttcactagtgatacctttta--cacatctgcttctgctgcttacactaactttttttttttg---tgttgctgcttatat-----atagGTCAACGAAGCTGATATTGAAGAGTTTGAGGCAAACTACAGGGGATCTGAGTCAGAGAAGAAAGACTTGCTTGAGCTTTTCAACAAGTTTAAGGGTAAAA

upper sequence: Vv08s0007g07960.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: AT3G12170.1 (Arabidopsis thaliana), 3'ss of exon 4
gtcatatcattttgccttattatggaaaatttctgattt-cacgtaatcctcctatttattttcagactggaaagatgacatgtgaacacttg-cattggta--gcagGTTACTGAGGCAGATATTGAAGAGTTTGAAGCAAACTACAGAGGATCTGATTCAGAGAAGAATGATTTGATTGACCTGTACAAAAAGTGCAAGGGTAATA
                       | || | |  |||||  ||  | ||     | |  | |||   ||   |  | |    | || | |||   |||| ||     |||| || |||| |||||||||||||||||| || ||||| || || ||||| || |||||||||||||||||||| || || || ||||  |||||||| |
-----------------------gtaagaatcatgattcacaattgatttctttttggactttgcaacacaactgtttcgttctgtatactgatcatttgtgctatagGTCACCGAGGAAGATATTGAAGAGTTTGAGGCCAACTATAGGGGTTCTGAATCCGAGAAGAATGATTTGATTGAGCTATATAACAAGTTTAAGGGTAAAA

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|30297265|gb|CB974059.1|CB974059
EST:     GTGAAGTTGTTCAGAATTTGCATGAGTTTTTCAGAACCATGTCCAAAAAG                         GTTACTGAGGCAGATATTGAAGAGTTTGAAGCAAACTACAGAGGATCTGAT
genomic: GTGAAGTTGTTCAGAATTTGCATGAGTTTTTCAGAACCATGTACAAAAAGgtcatatcat ... ttggtagcagGTTACTGAGGCAGATATTGAAGAGTTTGAAGCAAACTACAGAGGATCTGAT
EST: gi|351015510|gb|FQ447339.1|FQ447339
EST:     GTGAAGTTGTTCAGAATTTGCATGAGTTTTTCAGAACCATGTACAAAAAG                         GTTACTGAGGCAGATATTGAAGAGTTTGAAGCAAACTACAGAGGATCTGAT
genomic: GTGAAGTTGTTCAGAATTTGCATGAGTTTTTCAGAACCATGTACAAAAAGgtcatatcat ... ttggtagcagGTTACTGAGGCAGATATTGAAGAGTTTGAAGCAAACTACAGAGGATCTGAT
EST: gi|349825564|gb|FQ419481.1|FQ419481
EST:     GTGAAGTTGTTCAGAATTTGCATGAGTTTTTCAGAACCATGTACAAAAAG                         GTTACTGAGGCAGATATTGAAGAGTTTGAAGCAAACTACAGAGGATCTGAT
genomic: GTGAAGTTGTTCAGAATTTGCATGAGTTTTTCAGAACCATGTACAAAAAGgtcatatcat ... ttggtagcagGTTACTGAGGCAGATATTGAAGAGTTTGAAGCAAACTACAGAGGATCTGAT
EST: gi|30297223|gb|CB974017.1|CB974017
EST:     GTGAAGTTGTTCAGAATTTGCATGAGTTTTTCAGAACCATGTACAAAAAG                         GTTACTGAGGCAGATATTGAAGAGTTTGAAGCAAACTACAGAGGATCTGAT
genomic: GTGAAGTTGTTCAGAATTTGCATGAGTTTTTCAGAACCATGTACAAAAAGgtcatatcat ... ttggtagcagGTTACTGAGGCAGATATTGAAGAGTTTGAAGCAAACTACAGAGGATCTGAT
EST: gi|352794289|gb|FQ479531.1|FQ479531
EST:     GTGAAGTTGTTCAGAATTTGCATGAGTTTTTCAGAACCATGTACAAAAAG                         GTTACTGAGGCAGATATTGAAGAGTTTGAAGCAAACTACAGAGGATCTGAT
genomic: GTGAAGTTGTTCAGAATTTGCATGAGTTTTTCAGAACCATGTACAAAAAGgtcatatcat ... ttggtagcagGTTACTGAGGCAGATATTGAAGAGTTTGAAGCAAACTACAGAGGATCTGAT
EST: gi|351028672|gb|FQ446345.1|FQ446345
EST:     GTGAAGTTGTTCAGAATTTGCATGAGTTTTTCAGAACCATGTACAAAAAG                         GTTACTGAGGCAGATATTGAAGAGTTTGAAGCAAACTACAGAGGATCTGAT
genomic: GTGAAGTTGTTCAGAATTTGCATGAGTTTTTCAGAACCATGTACAAAAAGgtcatatcat ... ttggtagcagGTTACTGAGGCAGATATTGAAGAGTTTGAAGCAAACTACAGAGGATCTGAT
EST: gi|351054628|gb|FQ456825.1|FQ456825
EST:     GTGAAGTTGTTCAGAATTTGCATGAGTTTTTCAGAACCATGCACAAAAAG                         GTTACTGAGGCAGATATTGAAGAGTTTGAAGCAAACTACAGAGGATCTGAT
genomic: GTGAAGTTGTTCAGAATTTGCATGAGTTTTTCAGAACCATGTACAAAAAGgtcatatcat ... ttggtagcagGTTACTGAGGCAGATATTGAAGAGTTTGAAGCAAACTACAGAGGATCTGAT
EST: gi|110686833|gb|EE063714.1|EE063714
EST:     GTGAAGTTGTTCAGAATTTGCATGAGTTTTTCAGAACCATGTACAAAAAG                         GTTACTGAGGCAGATATTGAAGAGTTTGAAGCAAACTACAGAGGATCTGAT
genomic: GTGAAGTTGTTCAGAATTTGCATGAGTTTTTCAGAACCATGTACAAAAAGgtcatatcat ... ttggtagcagGTTACTGAGGCAGATATTGAAGAGTTTGAAGCAAACTACAGAGGATCTGAT
EST: gi|349827514|gb|FQ422382.1|FQ422382
EST:     GTGAAGTTGTTCAGAATTTGCATGAGTTTTTCAGAACCATGTACAAAAAG                         GTTACTGAGGCAGATATTGAAGAGTTTGAAGCAAACTACAGAGGATCTGAT
genomic: GTGAAGTTGTTCAGAATTTGCATGAGTTTTTCAGAACCATGTACAAAAAGgtcatatcat ... ttggtagcagGTTACTGAGGCAGATATTGAAGAGTTTGAAGCAAACTACAGAGGATCTGAT
EST: gi|110701183|gb|EE078491.1|EE078491
EST:     GTGAAGTTGTTCAGAATTTGCATGAGTTTTTCAGAACCATGTACAAAAAG                         GTTACTGAGGCAGATATTGAAGAGTTTGAAGCCAACTACAGAGGATCTGAT
genomic: GTGAAGTTGTTCAGAATTTGCATGAGTTTTTCAGAACCATGTACAAAAAGgtcatatcat ... ttggtagcagGTTACTGAGGCAGATATTGAAGAGTTTGAAGCAAACTACAGAGGATCTGAT
EST: gi|351048863|gb|FQ431528.1|FQ431528
EST:     GTGAAGTTGTTCAGAATTTGCATGAGTTTTTCAGAACCATGTACAAAAAG                         GTTACTGAGGCAGATATTGAAGAGTTTGAAGCAAACTACAGAGGATCTGAT
genomic: GTGAAGTTGTTCAGAATTTGCATGAGTTTTTCAGAACCATGTACAAAAAGgtcatatcat ... ttggtagcagGTTACTGAGGCAGATATTGAAGAGTTTGAAGCAAACTACAGAGGATCTGAT
EST: gi|351023284|gb|FQ432667.1|FQ432667
EST:     GTGAAGTTGTTCAGAATTTGCATGAGTTTTTCAGAACCATGTACAAAAAG                         GTTACTGAGGCAGATATTGAAGAGTTTGAAGCAAACTACAGAGGATCTGAT
genomic: GTGAAGTTGTTCAGAATTTGCATGAGTTTTTCAGAACCATGTACAAAAAGgtcatatcat ... ttggtagcagGTTACTGAGGCAGATATTGAAGAGTTTGAAGCAAACTACAGAGGATCTGAT
EST: gi|351040488|gb|FQ434621.1|FQ434621
EST:     GTGAAGTTGTTCAGAATTTGCATGAGTTTTTCAGAACCATGTACAAAAAG                         GTTACTGAGGCAGATATTGAAGAGTTTGAAGCAAACTACAGAGGATCTGAT
genomic: GTGAAGTTGTTCAGAATTTGCATGAGTTTTTCAGAACCATGTACAAAAAGgtcatatcat ... ttggtagcagGTTACTGAGGCAGATATTGAAGAGTTTGAAGCAAACTACAGAGGATCTGAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcctatttattttcagactggaaagatgacatgtgaacacttgcattggtagcagGTTACTGAGGCAGATATTGAAGAGTTTGAAGCAAACTACAGAGGATCTGATTCAGAGAAGAATGATTTGATTGACCTGTACAAAAAGTGCAAGGGTAATA
     tttattttca  TA-rich tract