1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
...tttcacattcagtattaattttcttggttattttcatatggctaaccatttagtgggagttcttgttgaccactttaatcatttattcacccttttgtagGTTGCTGTGTTTGCCAGTGGTGTTGATACCTCTGCAACAGAAACAAAAGGAACTGTCCTAATTCATAGTGCTGAGCAG
species | Vitis vinifera |
transcript | Vv08s0007g07460.t01 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: CTTTGAAAACTGATGCTGTTGGGAGTATAAAGAGAGTGGAAAAGGCAAAA GTTGCGGTGTTTGCEST: gi|71859802|gb|DT008857.1|DT008857
genomic: CTTTGAAAACTGATGCTGTTGGGAGTATAAAGAGAGTGGAAAAGGCAAAAgtaagaacat ... ccttttgtagGTTGCTGTGTTTGC
EST: CTTTGAAAACTGATGCTGTTGGGAGTATAAAGAGAGTGGAAAAGGCAAAA GTTGCGGTGTTTGCCAGTGGTGTTGATACCTCTGCAACAGAAACAAAAGGAEST: gi|110687426|gb|EE064824.1|EE064824
genomic: CTTTGAAAACTGATGCTGTTGGGAGTATAAAGAGAGTGGAAAAGGCAAAAgtaagaacat ... ccttttgtagGTTGCTGTGTTTGCCAGTGGTGTTGATACCTCTGCAACAGAAACAAAAGGA
EST: CTTTGAAAACTGATGCTGTTGGGAGTATAAAGAGAGTGGAAAAGGCAAAA GTTGCTGTGTTTGCCAGTGGTGTTGATACCTCTGCAACAGAAACAAAAGGAEST: gi|110701079|gb|EE078296.1|EE078296
genomic: CTTTGAAAACTGATGCTGTTGGGAGTATAAAGAGAGTGGAAAAGGCAAAAgtaagaacat ... ccttttgtagGTTGCTGTGTTTGCCAGTGGTGTTGATACCTCTGCAACAGAAACAAAAGGA
EST: CTTTGAAAACTGATGCTGTTGGGAGTATAAAGAGAGTGGAAAAGGCAAAA GTTGCTGTGTTTGCCAGTGGTGTTGATACCTCTGCAACAGAAACAAAAGGAEST: gi|110700665|gb|EE077518.1|EE077518
genomic: CTTTGAAAACTGATGCTGTTGGGAGTATAAAGAGAGTGGAAAAGGCAAAAgtaagaacat ... ccttttgtagGTTGCTGTGTTTGCCAGTGGTGTTGATACCTCTGCAACAGAAACAAAAGGA
EST: TTTTGAAA-CTGATGCTGTTGGGAGTATAAAGAGAGTGGAAA-GGCAAAA GTTGCGGTGTTTGCCAGTGGTGGTGATACCTCTGCAACAGAAACAAAAGGA
genomic: TTT-GAAAACTGATGCTGTTGGGAGTATAAAGAGAGTGGAAAAGGCAAAAgtaagaacat ... ccttttgtagGTTGCTGTGTTTGCCAGTGGTGTTGATACCTCTGCAACAGAAACAAAAGGA
ccatttagtgggagttcttgttgaccactttaatcatttattcacccttttgtagGTTGCTGTGTTTGCCAGTGGTGTTGATACCTCTGCAACAGAAACAAAAGGAACTGTCCTAATTCATAGTGCTGAGCAG
tttattcaccctttt CT-rich tract
actttaatcatttatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tttcacattcagtattaattttcttggttattttcatatggctaaccatttagtgggagttcttgttgaccactttaatcatttattcacccttttgtagGTTGCTGTGTTTGCCAGTGGTGTTGATACCTCTGCAACAGAAACAAAAGGAACTGTCCTAATTCATAGTGCTGAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- -cacattc
- - - - - - - - - - ttcttgg
- - - - - - - - - - - - - - - - - - - - -ctaacca
- - - - - - - - - - - - - - - - - - - - - - - - - tagtggg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tattcac