Sequence
atgc intronic sequence ATGC exonic sequencegtaggtttctttgttgggtttcttctaataaacttaagttttttgcaaaatgtaactcaaattctcttcttaatatatccacagCTATGGGAGGATATACTGCTTGCAAGTTGATAGGGTCGCTATGCTCCTCCACTCATATAGGTTTTACCGTGATGCTGTTGTACAACAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv08s0007g06830.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GRMZM2G444692_T03 (Zea mays), 3'ss of exon 1
gtaggtttctttgttgggtttcttctaataaacttaagttttttgcaaaatgtaactcaaattctcttcttaatata-tccacagCTATGGGAGGATATACTGCTTGCAAGTTGATAGGGTCGCTATGCTCCTCCACTCATATAGGTTTTACCGTGATGCTGTTGTACAACAG
| | || || | | ||||| | || | | | | | ||| || | | | |||||||||| ||||| || |||||||| |||| || || |||| | | |||| | |||||||||||||||||||||||||||
-------------gtacgccctctcactcttgctcatctcttttgaagaaac--atttacactgactttttctcaaacttgacagCTATGGTAGGATTTATTGCTTGCAGCTTGACAGAGTTAGTATGTCATTGAATCTATATCGCTTTTACCGTGATGCTGTTGTACAACAG
upper sequence: Vv08s0007g06830.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA03G30320.1 (Glycine max), 3'ss of exon 8
gtaggtttct-ttgttgggtttcttctaataaacttaagttttttgcaaaatgtaactcaaa---ttctcttcttaata--tatccacagCTATGGGAGGATATACTGCTTGCAAGTTGATAGGGTCGCTATGCTCCTCCACTCATATAGGTTTTACCGTGATGCTGTTGTACAACAG
||| || || | || || || || || || | | | | | ||| || | | | || | | |||||| ||||| |||||||||||||||||||||||||| || |||||||| ||||| || |||||| | || |||||||| || |||| |||
gtatgtatcagctatttacttcaaacttatgcctttgtaattaatatagcttcctaattaaagttttgtatcttcaacaatcaaccacagTTATGGTAGGATATACTGCTTGCAAGTTGATAGAGTTGCTATGCTGCTCCATTCTTATAGGCTATATCGTGATGCAGTGATACAGCAG
upper sequence: Vv08s0007g06830.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA19G33240.1 (Glycine max), 3'ss of exon 4
----------gtaggtttctttgttgggtttcttctaataaacttaagttttttgcaaaatgtaactcaaattctcttcttaatatatccacagCTATGGGAGGATATACTGCTTGCAAGTTGATAGGGTCGCTATGCTCCTCCACTCATATAGGTTTTACCGTGATGCTGTTGTACAACAG
| || ||| | || | || | |||| | | | | | || | || || ||| | |||||| ||||| |||||||||||||||||||||||||| || |||||||| || || || |||||| | || |||||||| || | || |||
gtatgtattggctatttacttcatcaaacttaggcctttataattaatatagcttcctatttaaagttttatatctttaacaat-caaccacagTTATGGTAGGATATACTGCTTGCAAGTTGATAGAGTTGCTATGCTGCTTCATTCTTATAGGCTATATCGTGATGCAGTGATTCAGCAG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.aaacttaagttttttgcaaaatgtaactcaaattctcttcttaatatatccacagCTATGGGAGGATATACTGCTTGCAAGTTGATAGGGTCGCTATGCTCCTCCACTCATATAGGTTTTACCGTGATGCTGTTGTACAACAG
tcttaat putative branch site (score: 3)
tcttcttaatatat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtaggtttctttgttgggtttcttctaataaacttaagttttttgcaaaatgtaactcaaattctcttcttaatatatccacagCTATGGGAGGATATACTGCTTGCAAGTTGATAGGGTCGCTATGCTCCTCCACTCATATAGGTTTTACCGTGATGCTGTTGTACAACAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT