Sequence
atgc intronic sequence ATGC exonic sequence...atgtttggggtgtaaggttgtggttaattcttatatgtttcttgttgtttcattttgacttgtattttgttaagcttagctaatcaatttcttgttttagGCATTACTTGATTGTTTCGGCTGTAACAAATTTATTGGTGAATCTTATTGGCGTTTGGTTCTTCAGGAACTATGCTCGCATCAATCTTG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv08s0007g06550.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA19G33030.1 (Glycine max), 3'ss of exon 4
atgtttggggtgtaaggttgtggttaattc-ttatatgtttcttgttgtttcattttgacttgtattttgttaagcttagctaatc---aatttcttgttttagGCATTACTTGATTGTTTCGGCTGTAACAAATTTATTGGTGAATCTTATTGGCGTTTGGTTCTTCAGGAACTATGCTCGCATCAATCTTG
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----atgggaaggggttgtttgtctaatttgtgacattttcattctaacaattttgttttttatttctttctaatttttatttatgctgactatgttcttgtagGCATTACTTGATTGTTTCTGCAGTGACCAATTTATTTGTGAATCTTGTTGGTGTATGGTTCTTCAGAAACTATGCTCGGATTAATCTTG
upper sequence: Vv08s0007g06550.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA03G30140.1 (Glycine max), 3'ss of exon 4
atgtttggggtgtaaggttg--tggttaattcttatatgtttcttgttgtttcatttt-gacttgtattttgttaagcttagctaatc--aatttcttgttttagGCATTACTTGATTGTTTCGGCTGTAACAAATTTATTGGTGAATCTTATTGGCGTTTGGTTCTTCAGGAACTATGCTCGCATCAATCTTG
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--gaaggggttgtttgtttgtctaatttgtgactttttcattctaacaattttgtttttgatttctttctaatt---tttatttattctgactctgttcttgtagGCATTACTTGATTGTTTCTGCAGTGACCAATTTATTTGTGAATCTTGTTGGTGTATGGTTCTTCAGAAACTATGCTCGGATTAATCTCAMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|161720919|gb|FC070323.1|FC070323EST: TTGGCTGTGGAAGCACTTCATGCATTCATACAAGATGAATCTGAGCACAA GCATTACTTGATTGTTTCGGCTGTAACAAATTTATTGGTGAATCTTATTGG
genomic: TTGGCTGTGGAAGCACTTCATGCATTCATACAAGATGAATCTGAGCACAAgtaagttgtt ... cttgttttagGCATTACTTGATTGTTTCGGCTGTAACAAATTTATTGGTGAATCTTATTGG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tgtttcattttgacttgtattttgttaagcttagctaatcaatttcttgttttagGCATTACTTGATTGTTTCGGCTGTAACAAATTTATTGGTGAATCTTATTGGCGTTTGGTTCTTCAGGAACTATGCTCGCATCAATCTTG
agctaat putative branch site (score: 3)
tttcttgtttt putative PPT
ttgtattttgttaa TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
atgtttggggtgtaaggttgtggttaattcttatatgtttcttgttgtttcattttgacttgtattttgttaagcttagctaatcaatttcttgttttagGCATTACTTGATTGTTTCGGCTGTAACAAATTTATTGGTGAATCTTATTGGCGTTTGGTTCTTCAGGAACTATGCTCGCATCAATCTTG
-tgtttgg
- - - - - - - -ggttgtg
- - - - - - - - - - - - - - - - - - - - cttgttg