Sequence
atgc intronic sequence ATGC exonic sequencegtgagaaaagtcccctttcctttttcagatattattttttgatctgcagatttttctttaacgcaagatgataaataagtcttggcttctaggcctgccatatctccaggcatctggttatgatttgacttattccttgttgagcagCTATGGTTTGCAAATGGACATCATTCGTCTAGATTTCAAGTCTGGTTTGGAGGCCCTATTAGAGGCTAAACCAATCAGAGCTATTTTTCTTGGTGTCCGA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv08s0007g04980.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA03G34140.1 (Glycine max), 3'ss of exon 3
gtgagaaaagtcccctttcctttttcagatattattttttgatct-----------gcagatttttctttaacgcaagatgataaataagt--cttggcttctag----gcctgccatatct---ccaggcatctggttatgatttga-----------ct-----tattccttgttgagcagCTATGGTTTGCAAATGGACATCATTCGTCTAGATTTCAAGTCTGGTTTGGAGGCCCTATTAGAGGCTAAACCAATCAGAGCTATTTTTCTTGGTGTCCGA
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gtgagtgaagcttcttcttcctttctacttttttttttttttttttatttgtcattgaagtttagataatattgagaggtgatatattcctcccttaatttctaccattgtttgtaatttttaaacttggaggcttgtcctcctttaaaggtagagcagctaatgattttttttcttgagcagCTATGGGTTGCAAATTGACACCATTAGCTTAGATTTCAAGTCTGGTTTGGAGGCTTTGCTAAAGGAAAAACCGATTCGAGCTATCTTCCTTGGAGTTCGA
upper sequence: Vv08s0007g04980.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA19G36860.1 (Glycine max), 3'ss of exon 4
gtgagaaaag-----tcccctttcctttttcagatattattttttgatc--tgcagatttttctttaacgcaagatgata------------aataagtcttggcttctaggcctgccatatctccaggcatctggtt--------atgatttgacttat--tccttgttgagcagCTATGGTTTGCAAATGGACATCATTCGTCTAGATTTCAAGTCTGGTTTGGAGGCCCTATTAGAGGCTAAACCAATCAGAGCTATTTTTCTTGGTGTCCGA
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gtgagtgaagcttcttcctttctactttttaattttttatttatttgtcattgcagtttagatattatggagaggtgatattttcctcccttaatttgtaccgttgtttgtaattcttaaacttggaggcttgtcctcctttaaaggtggagcaactaatgatttttcttgagtagCTATGGGTTGCAAATTGACACCATTAGCTTAGATTTCAAGTCTGGTTTGGAGGCTTTGCTAAAGGAAAAACCGATTCGAGCTATCTTCCTTGGAGTTCGA
upper sequence: Vv08s0007g04980.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: AT5G03430.1 (Arabidopsis thaliana), 3'ss of exon 4
gtgagaaaagtcccctttcctttttcagatattattttttgatctgcagatttttctttaacgcaagatgataaataagtcttggcttctaggcctgccatatctccaggcatctggtta-tgatttgacttattccttgttgagcagCTATGGTTTGCAAATGGACATCATTCGTCTAGATTTCAAGTCTGGTTTGGAGGCCCTATTAGAGGCTAAACCAATCAGAGCTATTTTTCTTGGTGTCCGA
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--------------------------------------------------------------gtaaga--atagttcgttctattcctctgtgtatg--atattttctg----ctggttaactgatcatcttattctatctcg-gcagTTACAATCTGCAACTTGATATCATTCGCCAGGATTTCAAATCCGGGTTGGAGGCATTATTAAAGGCTAACCCTATCAGAGCTATTTTCCTTGGCGTCCGAMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|71855620|gb|DT004675.1|DT004675EST: CCTTCTGCTTTCCCTGAAATCAATTCATTTACTTATGAAACAGCCACTAC CTATGGTTTGCAAATGGACATCATTCGTCTAGATTTCAAGTCTGGTTTGGA
genomic: CCTTCTGCTTTCCCTGAAATCAATTCATTTACTTATGAAACAGCCACTACgtgagaaaag ... tgttgagcagCTATGGTTTGCAAATGGACATCATTCGTCTAGATTTCAAGTCTGGTTTGGA
EST:
gi|71855442|gb|DT004497.1|DT004497EST: CCTTCTGCTTTCCCTGAAATCAATTCATTTACTTATGAAACAGCCACTAC CTATGGTTTGCA
genomic: CCTTCTGCTTTCCCTGAAATCAATTCATTTACTTATGAAACAGCCACTACgtgagaaaag ... tgttgagcagCTATGGTTTGCA
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gcctgccatatctccaggcatctggttatgatttgacttattccttgttgagcagCTATGGTTTGCAAATGGACATCATTCGTCTAGATTTCAAGTCTGGTTTGGAGGCCCTATTAGAGGCTAAACCAATCAGAGCTATTTTTCTTGGTGTCCGA
atttgac putative branch site (score: 4)
cttattcctt CT-rich tract
ttatgattt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtgagaaaagtcccctttcctttttcagatattattttttgatctgcagatttttctttaacgcaagatgataaataagtcttggcttctaggcctgccatatctccaggcatctggttatgatttgacttattccttgttgagcagCTATGGTTTGCAAATGGACATCATTCGTCTAGATTTCAAGTCTGGTTTGGAGGCCCTATTAGAGGCTAAACCAATCAGAGCTATTTTTCTTGGTGTCCGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT