1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtaagttttgtcgatcgccttcttttctgtgtactcaactttggcacattgttgatgtgcacattgttatttgttggatgctgcagGAAATGGTGGATTTTTTAGTTGATATATGGCATGAGGAAGGTCTCTATGACTAGACAAGAGGGGAGGTTTTCTTTAGTGGACAGTGAAGAGTGTTGCAAA
species | Vitis vinifera |
transcript | Vv08s0007g04960.t01 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: AGGACCTGCTCTTATCCACTGATCGTTTTCATCAGCCAATCCCATTAGCT GAAATGGTGGATTTTTTAGTTGATATATGGCATGAGGAAGGTCTCTATGACEST: gi|110691149|gb|EE068923.1|EE068923
genomic: AGGACCTGCTCTTATCCACTGATCGTTTTCATCAGCCAATCCCATTAGCTgtaagttttg ... gatgctgcagGAAATGGTGGATTTTTTAGTTGATATATGGCATGAGGAAGGTCTCTATGAC
EST: AGGACCTGCTCTTATCCACTGATCGTTTTCATCAGCCAATCCCATTAGCT GAAATGGTGGATTTTTTAGTTGATATATGGCATGAGGAAGGTCTCTATGACEST: gi|18459041|gb|BM437319.1|BM437319
genomic: AGGACCTGCTCTTATCCACTGATCGTTTTCATCAGCCAATCCCATTAGCTgtaagttttg ... gatgctgcagGAAATGGTGGATTTTTTAGTTGATATATGGCATGAGGAAGGTCTCTATGAC
EST: AGGACCTGCTCTTATCCACTGATCGTTTTCATCAGCCAATCCCATTAGCT GAAATGGTGGATTTTTTAGTTGATATATGGCATGAGGAAGGTCTCTATGACEST: gi|32461311|gb|CD802485.1|CD802485
genomic: AGGACCTGCTCTTATCCACTGATCGTTTTCATCAGCCAATCCCATTAGCTgtaagttttg ... gatgctgcagGAAATGGTGGATTTTTTAGTTGATATATGGCATGAGGAAGGTCTCTATGAC
EST: TCCACTGATCGTTTTCATCAGCCAATCCCATTAGCT GEST: gi|32461311|gb|CD802485.1|CD802485
genomic: TCCACTGATCGTTTTCATCAGCCAATCCCATTAGCTgtaagttttg ... gatgctgcag-
EST: TCCACTGATCGTTTTCATCAGCCAATCCCATTAGCT GEST: gi|32461311|gb|CD802485.1|CD802485
genomic: TCCACTGATCGTTTTCATCAGCCAATCCCATTAGCTgtaagttttg ... gatgctgcag-
EST: TCCACTGATCGTTTTCATCAGCCAATCCCATTAGCT GEST: gi|30328104|gb|CD011366.1|CD011366
genomic: TCCACTGATCGTTTTCATCAGCCAATCCCATTAGCTgtaagttttg ... gatgctgcag-
EST: ACCTGCTCTTATCCACTGATCGTTTTCATCAGCCAATCCCATTAGCT GAAATGGTGGATTTTTTAGTTGATATATGGCATGAGGAAGGTCTCTATGACEST: gi|30320614|gb|CD003876.1|CD003876
genomic: ACCTGCTCTTATCCACTGATCGTTTTCATCAGCCAATCCCATTAGCTgtaagttttg ... gatgctgcagGAAATGGTGGATTTTTTAGTTGATATATGGCATGAGGAAGGTCTCTATGAC
EST: AGGACCTGCTCTTATCCACTGATCGTTTTCATCAGCCAATCCCATTAGCT GAAATGGTGGATTTTTTAGTTGATATATGGCATGAGGAAGGTCTCTATGAC
genomic: AGGACCTGCTCTTATCCACTGATCGTTTTCATCAGCCAATCCCATTAGCTgtaagttttg ... gatgctgcagGAAATGGTGGATTTTTTAGTTGATATATGGCATGAGGAAGGTCTCTATGAC
tactcaactttggcacattgttgatgtgcacattgttatttgttggatgctgcagGAAATGGTGGATTTTTTAGTTGATATATGGCATGAGGAAGGTCTCTATGACTAGACAAGAGGGGAGGTTTTCTTTAGTGGACAGTGAAGAGTGTTGCAAA
tgttgat putative branch site (score: 4)
attgttattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagttttgtcgatcgccttcttttctgtgtactcaactttggcacattgttgatgtgcacattgttatttgttggatgctgcagGAAATGGTGGATTTTTTAGTTGATATATGGCATGAGGAAGGTCTCTATGACTAGACAAGAGGGGAGGTTTTCTTTAGTGGACAGTGAAGAGTGTTGCAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA