1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...taatgcctgtgaaggtatagggatagaattgcatgtttgcatttcgaaatcaactccatacctaatcttttgtttcctttttacattttcattggcacagAGGGTCCAATCCTTTGATAAAAGATATCAGTATCTCCTGTTTGCAGCTGAACCATATGAGATAATTGCTTTCAAG
species | Vitis vinifera |
transcript | Vv08s0007g04710.t01 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TTGAAGACCTTGCAAAACCTAGGCACCGGTTTATGTCTTCTTTTGAGCAG AGGGTCCAATCCTTTGATAAAAGATATCAGTATCTCCTGTTTGCAGCTGAAEST: gi|30134998|gb|CB920336.1|CB920336
genomic: TTGAAGACCTTGCAAAACCTAGGCACCGGTTTATGTCTTCTTTTGAGCAGgtaagcagta ... attggcacagAGGGTCCAATCCTTTGATAAAAGATATCAGTATCTCCTGTTTGCAGCTGAA
EST: TTGAAGACCTTGCAAAACCTAGGCACCGGTTTATGTCTTCTTTTGAGCAG AGGGTCCAATCCTTTGATAAAAGATATCAGTATCTCCTGTTTGCAGCTGAAEST: gi|110710951|gb|EE087592.1|EE087592
genomic: TTGAAGACCTTGCAAAACCTAGGCACCGGTTTATGTCTTCTTTTGAGCAGgtaagcagta ... attggcacagAGGGTCCAATCCTTTGATAAAAGATATCAGTATCTCCTGTTTGCAGCTGAA
EST: TTGAAGACCTTGCAAAACCTAGGCACCGGTTTATGTCTTCTTTTGAGCAG AGGGTCCAATCCTTTGATAAAAGATATCAGTATCTCCTGTTTGCAGCTGAAEST: gi|161711277|gb|FC060365.1|FC060365
genomic: TTGAAGACCTTGCAAAACCTAGGCACCGGTTTATGTCTTCTTTTGAGCAGgtaagcagta ... attggcacagAGGGTCCAATCCTTTGATAAAAGATATCAGTATCTCCTGTTTGCAGCTGAA
EST: TTGAAGACCTTGCAAAACCTAGGCACCGGTTTATGTCTTCTTTTGAGCAG AGGGTCCAATCCTTTGATAAAAGATATCAGTATCTCCEST: gi|30133297|gb|CB918636.1|CB918636
genomic: TTGAAGACCTTGCAAAACCTAGGCACCGGTTTATGTCTTCTTTTGAGCAGgtaagcagta ... attggcacagAGGGTCCAATCCTTTGATAAAAGATATCAGTATCTCC
EST: TTGAAGACCTTGCAAAACCTAGGCACCGGTTTATGTCTTCTTTTGAGCAG AGGGTCCAATCCTTTGATAAAAGATATCAGTATCTCCTGTTTGCAGCTGAAEST: gi|110713768|gb|EE089980.1|EE089980
genomic: TTGAAGACCTTGCAAAACCTAGGCACCGGTTTATGTCTTCTTTTGAGCAGgtaagcagta ... attggcacagAGGGTCCAATCCTTTGATAAAAGATATCAGTATCTCCTGTTTGCAGCTGAA
EST: TTGAAGACCTTGCAAAACCTAGGCACCGGTTTATGTCTTCTTTTGAGCAG AGGGTCCAATCCTTTGATAAAAGATATCAGTATCTCCTGTTTGCAGCTGAAEST: gi|110686098|gb|EE063396.1|EE063396
genomic: TTGAAGACCTTGCAAAACCTAGGCACCGGTTTATGTCTTCTTTTGAGCAGgtaagcagta ... attggcacagAGGGTCCAATCCTTTGATAAAAGATATCAGTATCTCCTGTTTGCAGCTGAA
EST: TTGAAGACCTTGCAAAACCTAGGCACCGGTTTATGTCTTCTTTTGAGCAG AGGGTCCAATCCTTTGATAAAAGATATCAGTATCTCCTGTTTGCAGCTGAAEST: gi|156739019|gb|EV243140.1|EV243140
genomic: TTGAAGACCTTGCAAAACCTAGGCACCGGTTTATGTCTTCTTTTGAGCAGgtaagcagta ... attggcacagAGGGTCCAATCCTTTGATAAAAGATATCAGTATCTCCTGTTTGCAGCTGAA
EST: TTGAAGACCTTGCAAAACCTAGGCACCGGTTTATGTCTTCTTTTGAGCAG AGGGTCCAATCCTTTGATAAAAGATATCAGTATCTCCTGTTTGCAGCTGAAEST: gi|161707166|gb|FC055570.1|FC055570
genomic: TTGAAGACCTTGCAAAACCTAGGCACCGGTTTATGTCTTCTTTTGAGCAGgtaagcagta ... attggcacagAGGGTCCAATCCTTTGATAAAAGATATCAGTATCTCCTGTTTGCAGCTGAA
EST: TTGAAGACCTTGCAAAACCTAGGCACCGGTTTATGTCTTCTTTTGAGCAG AGGGTCCAATCCTTTGATAAAAGATATCAGTATCTCCTEST: gi|71872083|gb|DT021138.1|DT021138
genomic: TTGAAGACCTTGCAAAACCTAGGCACCGGTTTATGTCTTCTTTTGAGCAGgtaagcagta ... attggcacagAGGGTCCAATCCTTTGATAAAAGATATCAGTATCTCCT
EST: TTGAAGACCTTGCAAAACCTAGGCACCGGTTTATGTCTTCTTTTGAGCAG AGGGTCCAATCCTTTGATAAAAGATATCAGTATCTCCTGTTTGCAGCTGAAEST: gi|71869160|gb|DT018215.1|DT018215
genomic: TTGAAGACCTTGCAAAACCTAGGCACCGGTTTATGTCTTCTTTTGAGCAGgtaagcagta ... attggcacagAGGGTCCAATCCTTTGATAAAAGATATCAGTATCTCCTGTTTGCAGCTGAA
EST: TTGAAGACCTTGCAAAACCTAGGCACCGGTTTATGTCTTCTTTTGAGCAG AGGGTCCAATCCTTTGATAAAAGATATCAGTATCTCCTGTTTGCAGCTGAAEST: gi|110698196|gb|EE075475.1|EE075475
genomic: TTGAAGACCTTGCAAAACCTAGGCACCGGTTTATGTCTTCTTTTGAGCAGgtaagcagta ... attggcacagAGGGTCCAATCCTTTGATAAAAGATATCAGTATCTCCTGTTTGCAGCTGAA
EST: TTGAAGACCTTGCAAAACCTAGGCACCGGTTTATGTCTTCTTTTGAGCAG AGGGTCCAATCCTTTGATAAAAGATATCAGTATCTCCTGTTTGCAGCTGAAEST: gi|161714376|gb|FC063217.1|FC063217
genomic: TTGAAGACCTTGCAAAACCTAGGCACCGGTTTATGTCTTCTTTTGAGCAGgtaagcagta ... attggcacagAGGGTCCAATCCTTTGATAAAAGATATCAGTATCTCCTGTTTGCAGCTGAA
EST: TTGAAGACCTTGCAAAACCTAGGCACCGGTTTATGTCTTCTTTTGAGCAG AGGGTCCAATCCTTTGATAAAAGATATCAGTATCTCCTGTTTGCAGCTGAAEST: gi|71869133|gb|DT018188.1|DT018188
genomic: TTGAAGACCTTGCAAAACCTAGGCACCGGTTTATGTCTTCTTTTGAGCAGgtaagcagta ... attggcacagAGGGTCCAATCCTTTGATAAAAGATATCAGTATCTCCTGTTTGCAGCTGAA
EST: TTGAAGACCTTGCAAAACCTAGGCACCGGTTTATGTCTTCTTTTGAGCAG AGGGTCCAATCCTTTGATAAAAGATATCAGTATCTCCTGTTTGCAGCTGAAEST: gi|294964013|gb|GW836888.1|GW836888
genomic: TTGAAGACCTTGCAAAACCTAGGCACCGGTTTATGTCTTCTTTTGAGCAGgtaagcagta ... attggcacagAGGGTCCAATCCTTTGATAAAAGATATCAGTATCTCCTGTTTGCAGCTGAA
EST: TTGAAGACCTTGCAAAACCTAGGCACCGGTTTATGTCTTCTTTTGAGCAG AGGGTCCAATCCTTTGATAAAAGATATCAGTATCTCCTGTTTGCAGCTGAAEST: gi|27584644|gb|CB007339.1|CB007339
genomic: TTGAAGACCTTGCAAAACCTAGGCACCGGTTTATGTCTTCTTTTGAGCAGgtaagcagta ... attggcacagAGGGTCCAATCCTTTGATAAAAGATATCAGTATCTCCTGTTTGCAGCTGAA
EST: TTGAAGACCTTGCAAAACCTAGGCACCGGTTTATGTCTTCTTTTGAGCAG AGGGTCCAATCCTTTGATAAAAGATATCAGTATCTCCTGTTTGCAGCTGAAEST: gi|161712620|gb|FC061943.1|FC061943
genomic: TTGAAGACCTTGCAAAACCTAGGCACCGGTTTATGTCTTCTTTTGAGCAGgtaagcagta ... attggcacagAGGGTCCAATCCTTTGATAAAAGATATCAGTATCTCCTGTTTGCAGCTGAA
EST: TTGAAGACCTTGCAAAACCTAGGCACCGGTTTATGTCTTCTTTTGAGCAG AGGGTCCAATCCTTTGATAAAAGATATCAGTATCTCCTGTTTGCAGCTGAA
genomic: TTGAAGACCTTGCAAAACCTAGGCACCGGTTTATGTCTTCTTTTGAGCAGgtaagcagta ... attggcacagAGGGTCCAATCCTTTGATAAAAGATATCAGTATCTCCTGTTTGCAGCTGAA
gaaatcaactccatacctaatcttttgtttcctttttacattttcattggcacagAGGGTCCAATCCTTTGATAAAAGATATCAGTATCTCCTGTTTGCAGCTGAACCATATGAGATAATTGCTTTCAAG
acctaat putative branch site (score: 3)
tcttttgtttcctttt CT-rich tract
tttttacattttcatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| taatgcctgtgaaggtatagggatagaattgcatgtttgcatttcgaaatcaactccatacctaatcttttgtttcctttttacattttcattggcacagAGGGTCCAATCCTTTGATAAAAGATATCAGTATCTCCTGTTTGCAGCTGAACCATATGAGATAATTGCTTTCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
taatgcc
- - - - - - - - - - - - - - - gcatgtt
- - - - - - - - - - - - - - - - - - - gcatttc
- - - - - - - - - - - - - - - - - - - - - - - aaatcaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - -ccatacc