Sequence
atgc intronic sequence ATGC exonic sequence...ttgctgtatgtgatattgccagataaattttgattttattttttaaagtttgtggttggtcatgaactaaacgagtggtaaattttgcaattctgaccagTATGATGGCAACTGTCATGAATTCTATATTGCTCCAGTCAGCCTTAGAGAAGATGGGTGTTCAGACACGTGTGCAAACCGCATTTGCAATGCAGGAGGTT
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv08s0007g04160.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA10G07490.1 (Glycine max), 3'ss of exon 4
ttgctgtatgtgatattgccagataaattttgattttattttttaaagtttgtggttggtcatgaactaaacgagtggtaaat---tttgcaattctga-----ccagTATGATGGCAACTGTCATGAATTCTATATTGCTCCAGTCAGCCTTAGAGAAGATGGGTGTTCAGACACGTGTGCAAACCGCATTTGCAATGCAGGAGGTT
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---ttatctttcaaagtgat---ttactttcgttatcatttct--acgtttctttaaaacattgacctaaacaaataactactgttttcttgaacttgaatatgccagCATGATGGCAACTGTGATGAATTCAATATTGCTCCAATCGACTCTAGAGAAGATGGGTGTTCAGACTCGTGTACAAACTTCAGTTGCCATGCAGGAGTTT
upper sequence: Vv08s0007g04160.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA13G21370.1 (Glycine max), 3'ss of exon 4
ttgctgtatgtgatattgccagataaattttgattttattttttaaagtttgtggttggtcatgaactaaacgagtggtaaattttgcaattctga----ccagTATGATGGCAACTGTCATGAATTCTATATTGCTCCAGTCAGCCTTAGAGAAGATGGGTGTTCAGACACGTGTGCAAACCGCATTTGCAATGCAGGAGGTT
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-tggtcaatatattatctttcaaagtgatttacttctgttcct---actttctttaaaacattgacctaaataagtactgttttcttgaacttgaatataccagCATGATGGCCACTGTGATGAATTCAATATTGCTCCAATCTACTCTAGAGAAGATGGGTGTTCAGACTCGTGTACAAACTTCAGTTGCCATGCAGGAGTTTMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|161721228|gb|FC070734.1|FC070734EST: ACGTGGGTAACTGCAACTGGTCTAGATAGACCTACTGCCTATCAGATAGG TATGATGGCAACTGTCATGAATTC
genomic: ACGTGGGTAACTGCAACTGGTCTAGATAGACCTACTGCCTATCAGATAGGgtaatgtgtt ... ttctgaccagTATGATGGCAACTGTCATGAATTC
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.aagtttgtggttggtcatgaactaaacgagtggtaaattttgcaattctgaccagTATGATGGCAACTGTCATGAATTCTATATTGCTCCAGTCAGCCTTAGAGAAGATGGGTGTTCAGACACGTGTGCAAACCGCATTTGCAATGCAGGAGGTT
aactaaa putative branch site (score: 2)
taaattttgcaatt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ttgctgtatgtgatattgccagataaattttgattttattttttaaagtttgtggttggtcatgaactaaacgagtggtaaattttgcaattctgaccagTATGATGGCAACTGTCATGAATTCTATATTGCTCCAGTCAGCCTTAGAGAAGATGGGTGTTCAGACACGTGTGCAAACCGCATTTGCAATGCAGGAGGTT
- - -gtatgtg
- - - - - - -tattgcc
- - - - - - - - - - agataaa
- - - - - - - - - - - - - - - - - - - - - - - - - - tggttgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aactaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ttttgca