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gtaatacttttttgcatattttgctgaattctatttattagatatatttggattgtttgaagcaaaatcaatctcttttagtaatatatgaatgtgtttgcacaaaaatcaccaaattacagaattgccttaatagcacgttttcactaaccacctatctttggattgcagGTATAGAATTGATCCTTAGTACAGAAATAGTGAAAGCAGATCTTGCATCCAAAACTCTGATAAGTGCAGCTGGAGAAACCTTTAAGTATCACATCTTGAT
species | Vitis vinifera |
transcript | Vv08s0007g03610.t01 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TGTTGGAAGCGGAGGAGAGAGACTTCTTCCTGAGTGGTATAAAGAGAAAG GTATAGAATTGATCCTTGGTACAGAAATAGTGAAAGCAGATCTTGCATCCAEST: gi|71857656|gb|DT006711.1|DT006711
genomic: TGTTGGAAGCGGAGGAGAGAGACTTCTTCCTGAGTGGTATAAAGAGAAAGgtaatacttt ... tggattgcagGTATAGAATTGATCCTTAGTACAGAAATAGTGAAAGCAGATCTTGCATCCA
EST: TGTTGGAAGCGGAGGAGAGAGACTTCTTCCTGAGTGGTATAAAGAGAAAG GTATAGAATTGATCCTTGGTACAGAAATAGTGAAAGCAGATCTTGCATCCAEST: gi|71859550|gb|DT008605.1|DT008605
genomic: TGTTGGAAGCGGAGGAGAGAGACTTCTTCCTGAGTGGTATAAAGAGAAAGgtaatacttt ... tggattgcagGTATAGAATTGATCCTTAGTACAGAAATAGTGAAAGCAGATCTTGCATCCA
EST: TGTTGGAAGCGGAGGAGAGAGACTTCTTCCTGAGTGGTATAAAGAGAAAG GTATAGAATTGATCCTTGGTACAGAAATAGTGAAAGCAGATCTTGCATCCAEST: gi|30255667|gb|CB971799.1|CB971799
genomic: TGTTGGAAGCGGAGGAGAGAGACTTCTTCCTGAGTGGTATAAAGAGAAAGgtaatacttt ... tggattgcagGTATAGAATTGATCCTTAGTACAGAAATAGTGAAAGCAGATCTTGCATCCA
EST: TGTTGGAAGCGGAGGAGAGAGACTTCTTCCTGAGTGGTATAAAGAGAAAG GTATAGAATTGATCCTTEST: gi|110723311|gb|EE100477.1|EE100477
genomic: TGTTGGAAGCGGAGGAGAGAGACTTCTTCCTGAGTGGTATAAAGAGAAAGgtaatacttt ... tggattgcagGTATAGAATTGATCCTT
EST: AGAGACTTCTTCCTGAGTGGTATAAAGAGAAAG GTATAGAATTGATCCTTAGTACAGAAATAGTGAAAGCAGATCTTGCATCCAEST: gi|71856545|gb|DT005600.1|DT005600
genomic: AGAGACTTCTTCCTGAGTGGTATAAAGAGAAAGgtaatacttt ... tggattgcagGTATAGAATTGATCCTTAGTACAGAAATAGTGAAAGCAGATCTTGCATCCA
EST: TGTTGGAAGCGGAGGAGAGAGACTTCTTCCTGAGTGGTATAAAGAGAAAG GTATAGAATTGATCCTTGGTACAGAAATAGTGAAAGCAGATCTTGCATCCAEST: gi|71872394|gb|DT021449.1|DT021449
genomic: TGTTGGAAGCGGAGGAGAGAGACTTCTTCCTGAGTGGTATAAAGAGAAAGgtaatacttt ... tggattgcagGTATAGAATTGATCCTTAGTACAGAAATAGTGAAAGCAGATCTTGCATCCA
EST: TGTTGGAAGCGGAGGAGAGAGACTTCTTCCTGAGTGGTATAAAGAGAAAG GTATAGAATTGATCCTTGGTACAGAAATAGTGAAAGCAGATCTTGCATCCAEST: gi|161718345|gb|FC064769.1|FC064769
genomic: TGTTGGAAGCGGAGGAGAGAGACTTCTTCCTGAGTGGTATAAAGAGAAAGgtaatacttt ... tggattgcagGTATAGAATTGATCCTTAGTACAGAAATAGTGAAAGCAGATCTTGCATCCA
EST: TGTTGGAAGCGGAGGAGAGAGACTTCTTCCTTAGTGGTATAAAGAGAAAG GTATAGAATTGATCCTTGGTACAGAAATAGTGAAAGCAGATCTTGCATCCAEST: gi|110380711|gb|EC945999.1|EC945999
genomic: TGTTGGAAGCGGAGGAGAGAGACTTCTTCCTGAGTGGTATAAAGAGAAAGgtaatacttt ... tggattgcagGTATAGAATTGATCCTTAGTACAGAAATAGTGAAAGCAGATCTTGCATCCA
EST: TGTTGGAAGCGGAGGAGAGAGACTTCTTCCTGAGTGGTATAAAGAGAAAG GTATAGAATTGATCCTTGGTACAGAAATAGTGAAAGCAGATCTTGCATCCAEST: gi|110728455|gb|EE104038.1|EE104038
genomic: TGTTGGAAGCGGAGGAGAGAGACTTCTTCCTGAGTGGTATAAAGAGAAAGgtaatacttt ... tggattgcagGTATAGAATTGATCCTTAGTACAGAAATAGTGAAAGCAGATCTTGCATCCA
EST: TGTTGGAAGCGGAGGAGAGAGACTTCTTCCTGAGTGGTATAAAGAGAAAG GTATAGAATTGATCCTTAGTACAGAAATAGTGAAAGCAGATCTTGCATCCAEST: gi|161707787|gb|FC056440.1|FC056440
genomic: TGTTGGAAGCGGAGGAGAGAGACTTCTTCCTGAGTGGTATAAAGAGAAAGgtaatacttt ... tggattgcagGTATAGAATTGATCCTTAGTACAGAAATAGTGAAAGCAGATCTTGCATCCA
EST: TGTTGGAAGCGGAGGAGAGAGACTTCTTCCTGAGTGGTATAAAGAGAAAG GTATAGAATTGATCCTTGGTACAGAAATAGTGAAAGCAGATCTTGCATCCAEST: gi|71856042|gb|DT005097.1|DT005097
genomic: TGTTGGAAGCGGAGGAGAGAGACTTCTTCCTGAGTGGTATAAAGAGAAAGgtaatacttt ... tggattgcagGTATAGAATTGATCCTTAGTACAGAAATAGTGAAAGCAGATCTTGCATCCA
EST: TGTTGGAAGCGGAGGAGAGAGACTTCTTCCTGAGTGGTATAAAGAGAAAG GTATAGAATTGATCCTTGGTACAGAAATAGTGAAAGCAGATCTTGCATCCAEST: gi|37190404|gb|CF609753.1|CF609753
genomic: TGTTGGAAGCGGAGGAGAGAGACTTCTTCCTGAGTGGTATAAAGAGAAAGgtaatacttt ... tggattgcagGTATAGAATTGATCCTTAGTACAGAAATAGTGAAAGCAGATCTTGCATCCA
EST: TGTTGGAAGCGGAGGAGAGAGACTTCTTCCTGAGTGGTATAAAGAGAAAG GTATAGAATTGATCCTTAGTACAGAAATAGTGAAAGCAGATCTTGCATCCAEST: gi|71859937|gb|DT008992.1|DT008992
genomic: TGTTGGAAGCGGAGGAGAGAGACTTCTTCCTGAGTGGTATAAAGAGAAAGgtaatacttt ... tggattgcagGTATAGAATTGATCCTTAGTACAGAAATAGTGAAAGCAGATCTTGCATCCA
EST: TGTTGGAAGCGGAGGAGAGAGACTTCTTCCTGAGTGGTATAAAGAGAAAG GTATAGAATTGATCCTTAGTACAGAAATAGTGAAAGCAGATCTTGCATCCAEST: gi|71858668|gb|DT007723.1|DT007723
genomic: TGTTGGAAGCGGAGGAGAGAGACTTCTTCCTGAGTGGTATAAAGAGAAAGgtaatacttt ... tggattgcagGTATAGAATTGATCCTTAGTACAGAAATAGTGAAAGCAGATCTTGCATCCA
EST: TGTTGGAAGCGGAGGAGAGAGACTTCTTCCTGAGTGGTATAAAGAGAAAG GTATAGAATTGATCCTTGGTACAGAAATAGTGAAAGCAGATCTTGCATCCAEST: gi|161713126|gb|FC062484.1|FC062484
genomic: TGTTGGAAGCGGAGGAGAGAGACTTCTTCCTGAGTGGTATAAAGAGAAAGgtaatacttt ... tggattgcagGTATAGAATTGATCCTTAGTACAGAAATAGTGAAAGCAGATCTTGCATCCA
EST: TGTTGGAAGCGGAGGAGAGAGACTTCTTCCTGAGTGGTATAAAGAGAAAG GTATAGAATTGATCCTTGGTACAGAAATAGTGAAAGCAGATCTTGCATCCAEST: gi|71860428|gb|DT009483.1|DT009483
genomic: TGTTGGAAGCGGAGGAGAGAGACTTCTTCCTGAGTGGTATAAAGAGAAAGgtaatacttt ... tggattgcagGTATAGAATTGATCCTTAGTACAGAAATAGTGAAAGCAGATCTTGCATCCA
EST: TGTTGGAAGCGGAGGAGAGAGACTTCTTCCTGAGTGGTATAAAGAGAAAG GTATAGAATTGATCCTTAGTACAGAAATAGTGAAAGCAGATCTTGCATCCAEST: gi|71861795|gb|DT010850.1|DT010850
genomic: TGTTGGAAGCGGAGGAGAGAGACTTCTTCCTGAGTGGTATAAAGAGAAAGgtaatacttt ... tggattgcagGTATAGAATTGATCCTTAGTACAGAAATAGTGAAAGCAGATCTTGCATCCA
EST: TGTTGGAAGCGGAGGAGAGAGACTTCTTCCTGAGTGGTATAAAGAGAAAG GTATAGAATTGATCCTTAGTACAGAAATAGTGAAAGCAGATCTTGCATCCAEST: gi|71887849|gb|DT036904.1|DT036904
genomic: TGTTGGAAGCGGAGGAGAGAGACTTCTTCCTGAGTGGTATAAAGAGAAAGgtaatacttt ... tggattgcagGTATAGAATTGATCCTTAGTACAGAAATAGTGAAAGCAGATCTTGCATCCA
EST: TGTTGGAAGCGGAGGAGAGAGACTTCTTCCTGAGTGGTATAAAGAGAAAG GTATAGAATTGATCCTTGGTACAGAAATAGTGAAAGCAGATCTTGCATCCAEST: gi|71862830|gb|DT011885.1|DT011885
genomic: TGTTGGAAGCGGAGGAGAGAGACTTCTTCCTGAGTGGTATAAAGAGAAAGgtaatacttt ... tggattgcagGTATAGAATTGATCCTTAGTACAGAAATAGTGAAAGCAGATCTTGCATCCA
EST: TGTTGGAAGCGGAGGAGAGAGACTTCTTCCTGAGTGGTATAAAGAGAAAG GTATAGAATTGATCCTTAGTACAGAAATAGTGAAAGCAGATCTTGCATCCAEST: gi|351014525|gb|FQ437527.1|FQ437527
genomic: TGTTGGAAGCGGAGGAGAGAGACTTCTTCCTGAGTGGTATAAAGAGAAAGgtaatacttt ... tggattgcagGTATAGAATTGATCCTTAGTACAGAAATAGTGAAAGCAGATCTTGCATCCA
EST: TGTTGGAAGCGGAGGAGAGAGACTTCTTCCTGAGTGGTATAAAGAGAAAG GTATAGAATTGATCCTTAGTACAGAAATAGTGAAAGCAGATCTTGCATCCAEST: gi|161711333|gb|FC060384.1|FC060384
genomic: TGTTGGAAGCGGAGGAGAGAGACTTCTTCCTGAGTGGTATAAAGAGAAAGgtaatacttt ... tggattgcagGTATAGAATTGATCCTTAGTACAGAAATAGTGAAAGCAGATCTTGCATCCA
EST: TGTTGGAAGCGGAGGAGAGAGACTTCTTCCTGAGTGGTATAAAGAGAAAG GTATAGAATTGATCCTTGGTACAGAAATAGTGAAAGCAGATCTTGCATCCAEST: gi|349827863|gb|FQ422731.1|FQ422731
genomic: TGTTGGAAGCGGAGGAGAGAGACTTCTTCCTGAGTGGTATAAAGAGAAAGgtaatacttt ... tggattgcagGTATAGAATTGATCCTTAGTACAGAAATAGTGAAAGCAGATCTTGCATCCA
EST: TGTTGGAAGCGGAGGAGAGAGACTTCTTCCTGAGTGGTATAAAGAGAAAG GTATAGAATTGATCCTTAGTACAGAAATAGTGAAAGCAGATCTTGCATCCAEST: gi|71860964|gb|DT010019.1|DT010019
genomic: TGTTGGAAGCGGAGGAGAGAGACTTCTTCCTGAGTGGTATAAAGAGAAAGgtaatacttt ... tggattgcagGTATAGAATTGATCCTTAGTACAGAAATAGTGAAAGCAGATCTTGCATCCA
EST: TGTTGGAAGCGGAGGAGAGAGACTTCTTCCTGAGTGGTATAAAGAGAAAG GTATAGAATTGATCCTTAGTACAGAAATAGTGAAAGCAGATCTTGCATCCAEST: gi|71863493|gb|DT012548.1|DT012548
genomic: TGTTGGAAGCGGAGGAGAGAGACTTCTTCCTGAGTGGTATAAAGAGAAAGgtaatacttt ... tggattgcagGTATAGAATTGATCCTTAGTACAGAAATAGTGAAAGCAGATCTTGCATCCA
EST: TGTTGGAAGCGGAGGAGAGAGACTTCTTCCTGAGTGGTATAAAGAGAAAG GTATAGAATTGATCCTTAGTACAGAAATAGTGAAAGCAGATCTTGCATCCAEST: gi|71857725|gb|DT006780.1|DT006780
genomic: TGTTGGAAGCGGAGGAGAGAGACTTCTTCCTGAGTGGTATAAAGAGAAAGgtaatacttt ... tggattgcagGTATAGAATTGATCCTTAGTACAGAAATAGTGAAAGCAGATCTTGCATCCA
EST: TGTTGGAAGCGGAGGAGAGAGACTTCTTCCTGAGTGGTATAAAGAGAAAG GTATAGAATTGATCCTTGGTACAGAAATAGTGAAAGCAGATCTTGCATCCA
genomic: TGTTGGAAGCGGAGGAGAGAGACTTCTTCCTGAGTGGTATAAAGAGAAAGgtaatacttt ... tggattgcagGTATAGAATTGATCCTTAGTACAGAAATAGTGAAAGCAGATCTTGCATCCA
ttacagaattgccttaatagcacgttttcactaaccacctatctttggattgcagGTATAGAATTGATCCTTAGTACAGAAATAGTGAAAGCAGATCTTGCATCCAAAACTCTGATAAGTGCAGCTGGAGAAACCTTTAAGTATCACATCTTGAT
cactaac putative branch site (score: 1)
cctatcttt putative PPT
ttaata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaatacttttttgcatattttgctgaattctatttattagatatatttggattgtttgaagcaaaatcaatctcttttagtaatatatgaatgtgtttgcacaaaaatcaccaaattacagaattgccttaatagcacgttttcactaaccacctatctttggattgcagGTATAGAATTGATCCTTAGTACAGAAATAGTGAAAGCAGATCTTGCATCCAAAACTCTGATAAGTGCAGCTGGAGAAACCTTTAAGTATCACATCTTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA