1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...atcagaccaaatgcactcttactttaggatgaaccattagaatctgactttggtatgcagtgcaccatgcaaaactcaaatcatttgtttctttttgcagCTGAGGCCTAAGAAGAAGATCAAGTGAGCTCTGGGTGGCTGTTGGTTTTGTGCTTTGGATTAATATTGATTTGTAATTTTGATTGAGGCAAGCAACTGGT
species | Vitis vinifera |
transcript | Vv08s0007g03030.t01 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: ATCCAAGGGCTGTAAACTGTCGGAAGAAGAAATGCGGCCATAGCAATCAG CTGAGGCCTAAGAAGAAGATCAAGTGAGCTCTGGGTGGCTGTTGGTTTTGTEST: gi|34320049|gb|CF372803.1|CF372803
genomic: ATCCAAGGGCTGTAAACTGTCGGAAGAAGAAATGCGGCCATAGCAATCAGgtctttctac ... ctttttgcagCTGAGGCCTAAGAAGAAGATCAAGTGAGCTCTGGGTGGCTGTTGGTTTTGT
EST: ATCCAAGGGCTGTAAACTGTCGGAAGAAGAAATGCGGCCATAGCAATCAG CTGAGGCCTAAGAAGAAGATCAAGTGAGCTCTGGGTGGCTGTTGGTTTTGTEST: gi|110393277|gb|EC958401.1|EC958401
genomic: ATCCAAGGGCTGTAAACTGTCGGAAGAAGAAATGCGGCCATAGCAATCAGgtctttctac ... ctttttgcagCTGAGGCCTAAGAAGAAGATCAAGTGAGCTCTGGGTGGCTGTTGGTTTTGT
EST: ATCCAAGGGCTGTAAACTGTCGGAAGAAGAAATGCGGCCATAGCAATCAG CTGAGGCCTAAGAAGAAGATCAAGTGAGCTCTGGGTGGCTGTTTGTTTTGTEST: gi|110372238|gb|EC936391.1|EC936391
genomic: ATCCAAGGGCTGTAAACTGTCGGAAGAAGAAATGCGGCCATAGCAATCAGgtctttctac ... ctttttgcagCTGAGGCCTAAGAAGAAGATCAAGTGAGCTCTGGGTGGCTGTTGGTTTTGT
EST: ATCCAAGGGCTGTAAACTGTCGGAAGAAGAAATGCGGCCATAGCAATCAG CTGAGGCCTAAGAAGAAGATCAAGTGAGCTCTGGGTGGCTGTTTGTTTTGTEST: gi|110389665|gb|EC954522.1|EC954522
genomic: ATCCAAGGGCTGTAAACTGTCGGAAGAAGAAATGCGGCCATAGCAATCAGgtctttctac ... ctttttgcagCTGAGGCCTAAGAAGAAGATCAAGTGAGCTCTGGGTGGCTGTTGGTTTTGT
EST: ATCCAAGGGCTGTAAACTGTCGGAAGAAGAAATGCGGCCATAGCAATCAG CTGAGGCCTAAGAAGAAGATCAAGTGAGCTCTGGGTGGCTGTTTGTTTTGTEST: gi|110387474|gb|EC952140.1|EC952140
genomic: ATCCAAGGGCTGTAAACTGTCGGAAGAAGAAATGCGGCCATAGCAATCAGgtctttctac ... ctttttgcagCTGAGGCCTAAGAAGAAGATCAAGTGAGCTCTGGGTGGCTGTTGGTTTTGT
EST: ATCCAAGGGCTGTAAACTGTCGGAAGAAGAAATGCGGCCATAGCAATCAG CTGAGGCCTAAGAAGAAGATCAAGTGAGCTCTGGGTGGCTGTTGGTTTTGTEST: gi|110417692|gb|EC983767.1|EC983767
genomic: ATCCAAGGGCTGTAAACTGTCGGAAGAAGAAATGCGGCCATAGCAATCAGgtctttctac ... ctttttgcagCTGAGGCCTAAGAAGAAGATCAAGTGAGCTCTGGGTGGCTGTTGGTTTTGT
EST: ATCCAAGGGCTGTAAACTGTCGGAAGAAGAAATGCGGCCATAGCAATCAG CTGAGGCCTAAGAAGAAGATCAAGTGAGCTCTGGGTGGCTGTTGGTTTTGT
genomic: ATCCAAGGGCTGTAAACTGTCGGAAGAAGAAATGCGGCCATAGCAATCAGgtctttctac ... ctttttgcagCTGAGGCCTAAGAAGAAGATCAAGTGAGCTCTGGGTGGCTGTTGGTTTTGT
gactttggtatgcagtgcaccatgcaaaactcaaatcatttgtttctttttgcagCTGAGGCCTAAGAAGAAGATCAAGTGAGCTCTGGGTGGCTGTTGGTTTTGTGCTTTGGATTAATATTGATTTGTAATTTTGATTGAGGCAAGCAACTGGT
atctgac putative branch site (score: 3)
tcatttgtttcttttt putative PPT
atttgtttcttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atcagaccaaatgcactcttactttaggatgaaccattagaatctgactttggtatgcagtgcaccatgcaaaactcaaatcatttgtttctttttgcagCTGAGGCCTAAGAAGAAGATCAAGTGAGCTCTGGGTGGCTGTTGGTTTTGTGCTTTGGATTAATATTGATTTGTAATTTTGATTGAGGCAAGCAACTGGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- -agaccaa
- - - - - -tgcactc
- - - - - - - - - - - - - - - - -ccattag
- - - - - - - - - - - - - - - - - - - - - - - - - - gtatgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccatgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaactca