1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...aaagaacttgcatatttatctttacttctttagaggttgctgacgtacacaactattgggtgatttaaatcattatgctgtttatcctttctttgttcagGATACTTAATGCATACTCAAAGGTTCCTCCAAAGCCCAAATTATCTTCAAGCAAAAG
species | Vitis vinifera |
transcript | Vv08s0007g02870.t01 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GGAAGTTGCAAATCTCTTTAGTAG GATACTTAATGCATACTCAAAGGTTCCTCCAAAGCCCAAATTATCTTCAAGEST: gi|161713925|gb|FC062591.1|FC062591
genomic: GGAAGTTGCAAATCTCTTTAGTAGgtattatttc ... ctttgttcagGATACTTAATGCATACTCAAAGGTTCCTCCAAAGCCCAAATTATCTTCAAG
EST: TGGTTTTACAATTCACGTGAATGTGAGGAAGTTGCAAATCTCTTTAGTAG GATACTTAATGCATACTCAAAGGTTCCTCCAAAGCCCAAATTATCTTCAAG
genomic: TGGTTTTACAATTCACGTGAATGTGAGGAAGTTGCAAATCTCTTTAGTAGgtattatttc ... ctttgttcagGATACTTAATGCATACTCAAAGGTTCCTCCAAAGCCCAAATTATCTTCAAG
tacacaactattgggtgatttaaatcattatgctgtttatcctttctttgttcagGATACTTAATGCATACTCAAAGGTTCCTCCAAAGCCCAAATTATCTTCAAGCAAAAG
ctgtttatcctttctt CT-rich tract
tgatttaaatcattat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aaagaacttgcatatttatctttacttctttagaggttgctgacgtacacaactattgggtgatttaaatcattatgctgtttatcctttctttgttcagGATACTTAATGCATACTCAAAGGTTCCTCCAAAGCCCAAATTATCTTCAAGCAAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
aaagaac
- - - - - - - - - - - - - - - - - - -tgctgac
- - - - - - - - - - - - - - - - - - - - - - - acacaac
- - - - - - - - - - - - - - - - - - - - - - - - - - - -ttgggtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaatcat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tatgctg