Sequence
atgc intronic sequence ATGC exonic sequencegtaagatctttcttcagttcctcagctgatattggaaaaatctaatcttggatctgtttgctttaactgttttggttggttcttgatgagaacagTAACATATACTATATCAATGACAAATTGGATAAGAGGACATGGACTTACATATTTGGAGCTTGCTGTGCTACTACTGTGTTCATACCCTCCTTTCACAAC
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv08s0007g02030.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA03G09100.1 (Glycine max), 3'ss of exon 4
---------------------------------gtaagatctttcttcagttcctcagctgatattggaa-aaatctaatcttggatctgtttgctttaactgttttggttggttctt-gatgagaacagTAACATATACTATATCAATGACAAATTGGATAAGAGGACATGGACTTACATATTTGGAGCTTGCTGTGCTACTACTGTGTTCATACCCTCCTTTCACAAC
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gtagcacctttgcttcgatttttaaggcaacctggagtaatctaaagtgggttctcatctattttttcaacgaagttttttttttcttttctctcatcttttttgttgcttgcttctttgatgcaaacagTAACATATACTACATAAATGACAAATTGGATAAACGGACTTGGACTTATATTTTTGGAGCTTGCTGTGCCACCACTGTGTTCATACCTTCCTTCCACAAT
upper sequence: Vv08s0007g02030.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA01G28310.1 (Glycine max), 3'ss of exon 4
gtaagatcttt-cttcagtt----------cctcagctgatattg---gaaaaatctaatcttggatctgtttgctttaa-ctgttttgg---ttggttctt-gatgagaacagTAACATATACTATATCAATGACAAATTGGATAAGAGGACATGGACTTACATATTTGGAGCTTGCTGTGCTACTACTGTGTTCATACCCTCCTTTCACAAC
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gtgacatctttgcttcgattttaaaggcaacttgaagtaatatagagtgggcaacttgaagttgtttttcttttctctcatcttttttggttcttgcttctttgatccaaacagTAACATCTACTACATAAATGACAAATTGGATAAACGGACTTGGACTTATATTTTTGGAGCTTGCTGTGCCACCACTGTTTTCATACCTTCCTTCCACAAT
upper sequence: Vv08s0007g02030.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA18G42640.1 (Glycine max), 3'ss of exon 4
gtaaga--tctttcttcagttcctcagctgatattggaaaaatctaatcttggatctgtttgctttaac-----------tgttttggttggttcttgatg--agaacagTAACATATACTATATCAATGACAAATTGGATAAGAGGACATGGACTTACATATTTGGAGCTTGCTGTGCTACTACTGTGTTCATACCCTCCTTTCACAAC
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gtaaagaccctttcttaatttctgcaaaaaaaatcgaggcaatcttgtataggtttgttctgattacacaacatcatttacactttttttggttcctgttgcaaaaacagTAACATCTACTACATAAATGACCACTTGGATAAACGAACTTGGACTTATATCTTTGGAGCTTGCTGTGCCACCTCTGTGTTCATACCCTCCTTTCACAAT
upper sequence: Vv08s0007g02030.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA03G09140.1 (Glycine max), 3'ss of exon 3
-----------------------------------------gtaagatctttcttcagttcctcagctgatattggaaaaatctaatcttggatctgtttgctttaactgttttggttggttcttgatgagaacagTAACATATACTATATCAATGACAAATTGGATAAGAGGACATGGACTTACATATTTGGAGCTTGCTGTGCTACTACTGTGTTCATACCCTCCTTTCACAAC
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gtaacatctttgcttcgattattaaggcaacttgaagtaatctaaagtgggttctcgtcttgttacaacaaatttgatgcttttcttctttcttttctgttgctctttttttctttttttttttttttgagaacagTAACATCTATTACATAAACGACAAATTGTATAAACGGACATGGACTTATATTTTTGGAGCTTGCTGTGCATTCACTGTGTTCATACCTTCCTTCCACAAT
upper sequence: Vv08s0007g02030.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA07G17810.1 (Glycine max), 3'ss of exon 5
--gtaagatctttcttcagttcctcagctgatattggaaaaatctaatcttggatctgtttgctttaactgt----------------tttggttggttcttgatg--agaacagTAACATATACTATATCAATGACAAATTGGATAAGAGGACATGGACTTACATATTTGGAGCTTGCTGTGCTACTACTGTGTTCATACCCTCCTTTCACAAC
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gtaaagaacctttcttaatttctgcaaaataatcaaattgggggcaatcttgtataggtttgttctgattacacaacatcttttgcactttttttggttcctgttgcaaaaacagTAACATCTACTACATAAATGACCACTTGGATAAACGAACTTGGACTTATATCTTTGGAGCTTGCTGTGCCACCTCTGTGTTCATACCTTCTTTTCACAATMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110685103|gb|EE063138.1|EE063138EST: TGTACTTTCCTCCTCTTTGGATCTGTCATTCAGCTGATAGCGTGTGCAAG TAACATATACTATATCAATGACAAATTGGATAAGAGGACATGGACTTACAT
genomic: TGTACTTTCCTCCTCTTTGGATCTGTCATTCAGCTGATAGCGTGTGCAAGgtaagatctt ... atgagaacagTAACATATACTATATCAATGACAAATTGGATAAGAGGACATGGACTTACAT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tctaatcttggatctgtttgctttaactgttttggttggttcttgatgagaacagTAACATATACTATATCAATGACAAATTGGATAAGAGGACATGGACTTACATATTTGGAGCTTGCTGTGCTACTACTGTGTTCATACCCTCCTTTCACAAC
tttaact TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtaagatctttcttcagttcctcagctgatattggaaaaatctaatcttggatctgtttgctttaactgttttggttggttcttgatgagaacagTAACATATACTATATCAATGACAAATTGGATAAGAGGACATGGACTTACATATTTGGAGCTTGCTGTGCTACTACTGTGTTCATACCCTCCTTTCACAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT