1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtaagaactaagaacatctttaatgttttcttatttagctggtgcatgattgatcagttacattttattcagcttgaatcttgctgacttactgtctaagacatttcattaaaatgacttgttggtttactctaatgcttgcttatggttacagAATGCTACCCAGAAAAGCCAGAAGGTTTTTGTCCATGTCCCATCTGAAATTGCTGCTCATGAAGTTGAGGAAATTG
species | Vitis vinifera |
transcript | Vv08s0007g01980.t01 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: AGCTAGGAATTCCCACCAAGGCTTATTATGCTGTTGAGGAAGTGAAAGAG AATGCCACCCAGAAAAGCCAGAAGGTTTTTGTCCATGTCCCATCTGAAATTEST: gi|110689439|gb|EE065663.1|EE065663
genomic: AGCTAGGAATTCCCACCAAGGCTTATTATGCTGTTGAGGAAGTGAAAGAGgtaagaacta ... atggttacagAATGCTACCCAGAAAAGCCAGAAGGTTTTTGTCCATGTCCCATCTGAAATT
EST: AGCTAGGAATTCCCACCAAGGCTTATTATGCTGTTGAGGAAGTGAAAGAG AATGCTACCCAGAAAAGCCAGAAGGTTTTTGTCCATGTCCCATCTGAAATTEST: gi|110409702|gb|EC975372.1|EC975372
genomic: AGCTAGGAATTCCCACCAAGGCTTATTATGCTGTTGAGGAAGTGAAAGAGgtaagaacta ... atggttacagAATGCTACCCAGAAAAGCCAGAAGGTTTTTGTCCATGTCCCATCTGAAATT
EST: CTAGGAATTCCCACCCAAGGCTTATTATGCTG-TGAGGGAAGTGAAAGAG AATGCTACCCAGAAAAGCCAGAAGGTTTTTGTCCATGTCCCATCTGAAATTEST: gi|110697690|gb|EE074900.1|EE074900
genomic: CTAGGAATTCCCA-CCAAGGCTTATTATGCTGTTGA-GGAAGTGAAAGAGgtaagaacta ... atggttacagAATGCTACCCAGAAAAGCCAGAAGGTTTTTGTCCATGTCCCATCTGAAATT
EST: AGCTAGGAATTCCCACCAAGGCTTATTATGCTGTTGAGGAAGTGAAAGAG AATGCTACCCAGAAAAGCCAGAAGGTTTTTGTCCATGTCCCATCTGAAATTEST: gi|33406800|gb|CF212427.1|CF212427
genomic: AGCTAGGAATTCCCACCAAGGCTTATTATGCTGTTGAGGAAGTGAAAGAGgtaagaacta ... atggttacagAATGCTACCCAGAAAAGCCAGAAGGTTTTTGTCCATGTCCCATCTGAAATT
EST: AGCTAGGAATTCCCACCAAGGCTTATTATGCTGTTGAGGAAGTGAAAGAG AATGCTACCCAGAAAAGCCAGAAGGTTTTTGTCCATGTCCCATCTGAAATTEST: gi|30297109|gb|CB973903.1|CB973903
genomic: AGCTAGGAATTCCCACCAAGGCTTATTATGCTGTTGAGGAAGTGAAAGAGgtaagaacta ... atggttacagAATGCTACCCAGAAAAGCCAGAAGGTTTTTGTCCATGTCCCATCTGAAATT
EST: AGCTAGGAATTCCCACCAAGGCTTATTATGCTGTTGAGGAAGTGAAAGAG AATGCCACCCAGAAAAGCCAGAAGGTTTTTGTCCATGTCCCATCTGAAATTEST: gi|33409710|gb|CF215337.1|CF215337
genomic: AGCTAGGAATTCCCACCAAGGCTTATTATGCTGTTGAGGAAGTGAAAGAGgtaagaacta ... atggttacagAATGCTACCCAGAAAAGCCAGAAGGTTTTTGTCCATGTCCCATCTGAAATT
EST: AGCTAGGAATTCCCACCAAGGCTTATTATGCTGTTGAGGAAGTGAAAGAG AATGCCACCCAGAAAAGCCAGAAGGTTTTTGTCCATGTCCCATCTGAAATTEST: gi|71864815|gb|DT013870.1|DT013870
genomic: AGCTAGGAATTCCCACCAAGGCTTATTATGCTGTTGAGGAAGTGAAAGAGgtaagaacta ... atggttacagAATGCTACCCAGAAAAGCCAGAAGGTTTTTGTCCATGTCCCATCTGAAATT
EST: AGCTAGGAATTCCCACCAAGGCTTATTATGCTGTTGAGGAAGTGAAAGAG AATGCTACCCAGAAAAGCCAGAAGGTTTTTGEST: gi|294967321|gb|GW836675.1|GW836675
genomic: AGCTAGGAATTCCCACCAAGGCTTATTATGCTGTTGAGGAAGTGAAAGAGgtaagaacta ... atggttacagAATGCTACCCAGAAAAGCCAGAAGGTTTTTG
EST: AGCTAGGAATTCCCACCAAGGCTTATTATGCTGTTGAGGAAGTGAAAGAG AATGCTACCCAGAAAAGCCAGAAGGTTTTTGTCCATGTCCCATCTGAAATTEST: gi|110713466|gb|EE089412.1|EE089412
genomic: AGCTAGGAATTCCCACCAAGGCTTATTATGCTGTTGAGGAAGTGAAAGAGgtaagaacta ... atggttacagAATGCTACCCAGAAAAGCCAGAAGGTTTTTGTCCATGTCCCATCTGAAATT
EST: AGCTAGGAATTCCCACCAAGGCTTATTATGCTGTTGAGGAAGTGAAAGAG AATGCTACCCAGAANAGCCAGAAGGTTTTTGTCCATGTCCCATCTGAAATTEST: gi|110711679|gb|EE088432.1|EE088432
genomic: AGCTAGGAATTCCCACCAAGGCTTATTATGCTGTTGAGGAAGTGAAAGAGgtaagaacta ... atggttacagAATGCTACCCAGAAAAGCCAGAAGGTTTTTGTCCATGTCCCATCTGAAATT
EST: AGCTAGGAATTCCCACCAAGGCTTATTATGCTGTTGAGGAAGTGAAAGAG AATGCTACCCAGAAAAGCCAGAAGGTTTTTGTCCATGTCCCATCTGAAATTEST: gi|71859938|gb|DT008993.1|DT008993
genomic: AGCTAGGAATTCCCACCAAGGCTTATTATGCTGTTGAGGAAGTGAAAGAGgtaagaacta ... atggttacagAATGCTACCCAGAAAAGCCAGAAGGTTTTTGTCCATGTCCCATCTGAAATT
EST: AGCTAGGAATTCCCACCAAGGCTTATTATGCTGTTGAGGAAGTGAAAGAG AATGCTACCCCAGAAAAGCCAGAAGGTEST: gi|110687327|gb|EE064641.1|EE064641
genomic: AGCTAGGAATTCCCACCAAGGCTTATTATGCTGTTGAGGAAGTGAAAGAGgtaagaacta ... atggttacagAATGCTACCC-AGAAAAGCCAGAAGGT
EST: AGCTAGGAATTCCCACCAAGGCTTATTATGCTGTTGAGGAAGTGAAAGAG AATGCTACCCAGAAAAGCCAGAAGGTTTTTGTCCATGTCCCATCTGAAATTEST: gi|161712650|gb|FC062222.1|FC062222
genomic: AGCTAGGAATTCCCACCAAGGCTTATTATGCTGTTGAGGAAGTGAAAGAGgtaagaacta ... atggttacagAATGCTACCCAGAAAAGCCAGAAGGTTTTTGTCCATGTCCCATCTGAAATT
EST: AGCTAGGAATTCCCACCAAGGCTTATTATGCTGTTGAGGAAGTGAAAGAG AATGCCACCCAGAAAAGCCAGAAGGTTTTTGTCCATGTCCEST: gi|110718297|gb|EE094970.1|EE094970
genomic: AGCTAGGAATTCCCACCAAGGCTTATTATGCTGTTGAGGAAGTGAAAGAGgtaagaacta ... atggttacagAATGCTACCCAGAAAAGCCAGAAGGTTTTTGTCCATGTCC
EST: AGCTAGGAATTCCCACCAAGGCTTATTATGCTGTTGAGGAAGTGAAAGAG AATGCTACCCAGAAAAGCCAGAAAGTTTTTGTCCATGTCCCATCTGAAATTEST: gi|30321841|gb|CD005103.1|CD005103
genomic: AGCTAGGAATTCCCACCAAGGCTTATTATGCTGTTGAGGAAGTGAAAGAGgtaagaacta ... atggttacagAATGCTACCCAGAAAAGCCAGAAGGTTTTTGTCCATGTCCCATCTGAAATT
EST: AGCTAGGAATTCCCACCAAGGCTTATTATGCTGTTGAGGAAGTGAAAGAG AATGCTACCCAGAAAAGCCAGAAGGTTTTTGTCCATGTCCCATCTGAAATTEST: gi|71864932|gb|DT013987.1|DT013987
genomic: AGCTAGGAATTCCCACCAAGGCTTATTATGCTGTTGAGGAAGTGAAAGAGgtaagaacta ... atggttacagAATGCTACCCAGAAAAGCCAGAAGGTTTTTGTCCATGTCCCATCTGAAATT
EST: AGCTAGGAATTCCCACCAAGGCTTATTATGCTGTTGAGGAAGTGAAAGAG AATGCTACCCAGAAAAGCCAGAAGGTTTTTGTCCATGTCCCATCTGAAATTEST: gi|29783602|gb|CB349901.2|CB349901
genomic: AGCTAGGAATTCCCACCAAGGCTTATTATGCTGTTGAGGAAGTGAAAGAGgtaagaacta ... atggttacagAATGCTACCCAGAAAAGCCAGAAGGTTTTTGTCCATGTCCCATCTGAAATT
EST: AGCTGGGAATTCCCACCAAGGCTTATTATGCTGTTGAGGAAGTGAAAGAG AATGCTACCCAGAAAAGCCAGAAGGTTTTTGTCCATGTCCCATCTGAAATTEST: gi|18459292|gb|BM437570.1|BM437570
genomic: AGCTAGGAATTCCCACCAAGGCTTATTATGCTGTTGAGGAAGTGAAAGAGgtaagaacta ... atggttacagAATGCTACCCAGAAAAGCCAGAAGGTTTTTGTCCATGTCCCATCTGAAATT
EST: AGCTAGGAATTCCCACCAAGGCTTATTATGCTGTTGAGGAAGTGAAAGAG AATGCTACCCAGAAAAGCCAGAAGGTTTTTGTCCATGTCCCATCTGAAATTEST: gi|110732758|gb|EE108326.1|EE108326
genomic: AGCTAGGAATTCCCACCAAGGCTTATTATGCTGTTGAGGAAGTGAAAGAGgtaagaacta ... atggttacagAATGCTACCCAGAAAAGCCAGAAGGTTTTTGTCCATGTCCCATCTGAAATT
EST: AGCTAGGAATTCCCACCAAGGCTTATTATGCTGTTGAGGAAGTGAAAGAG AATGCTACCCAGAAAAGCCAGAAGGTTTTTGTCCATGTCCCATCTGAAATTEST: gi|110690336|gb|EE067344.1|EE067344
genomic: AGCTAGGAATTCCCACCAAGGCTTATTATGCTGTTGAGGAAGTGAAAGAGgtaagaacta ... atggttacagAATGCTACCCAGAAAAGCCAGAAGGTTTTTGTCCATGTCCCATCTGAAATT
EST: AGCTAGGAATTCCCACCAAGGCTTATTATGCTGTTGAGGAAGTGAAAGAG AATGCTACCCAGAAAAGCCAGAAGGTTTTTGTCCATGTCCCATCTGAAATTEST: gi|33406603|gb|CF212230.1|CF212230
genomic: AGCTAGGAATTCCCACCAAGGCTTATTATGCTGTTGAGGAAGTGAAAGAGgtaagaacta ... atggttacagAATGCTACCCAGAAAAGCCAGAAGGTTTTTGTCCATGTCCCATCTGAAATT
EST: AGCTAGGAATTCCCACCAAGGCTTATTATGCTGTTGAGGAAGTGAAAGAG AATGCTACCCAGAAAAGCCAGAAGGTTTTTGTCCATGTCCCATCTGAAATTEST: gi|110396200|gb|EC961881.1|EC961881
genomic: AGCTAGGAATTCCCACCAAGGCTTATTATGCTGTTGAGGAAGTGAAAGAGgtaagaacta ... atggttacagAATGCTACCCAGAAAAGCCAGAAGGTTTTTGTCCATGTCCCATCTGAAATT
EST: AGCTAGGAATTCCCACCAAGGCTTATTATGCTGTTGAGGAAGTGAAAGAG AATGCCACCCAGAAAAGCCAGAAGGTTTTTGTCCATGTCCCATCTGAAATTEST: gi|110401013|gb|EC967604.1|EC967604
genomic: AGCTAGGAATTCCCACCAAGGCTTATTATGCTGTTGAGGAAGTGAAAGAGgtaagaacta ... atggttacagAATGCTACCCAGAAAAGCCAGAAGGTTTTTGTCCATGTCCCATCTGAAATT
EST: AGCTAGGAATTCCCACCAAGGCTTATTATGCTGTTGAGGAAGTGAAAGAG AATGCTACCCAGAAAAGCCAGAAGGTTTTTGTCCATGTCCCATCTGAAATTEST: gi|161721407|gb|FC070435.1|FC070435
genomic: AGCTAGGAATTCCCACCAAGGCTTATTATGCTGTTGAGGAAGTGAAAGAGgtaagaacta ... atggttacagAATGCTACCCAGAAAAGCCAGAAGGTTTTTGTCCATGTCCCATCTGAAATT
EST: AGCTAGGAATTCCCACCAAGGCTTATTATGCTGTTGAGGAAGTGAAAGAG AATGCTACCCAGAAAAGCCAGAAGGTTTTTGTCCATGTCCCATCTGAAATTEST: gi|110712994|gb|EE088527.1|EE088527
genomic: AGCTAGGAATTCCCACCAAGGCTTATTATGCTGTTGAGGAAGTGAAAGAGgtaagaacta ... atggttacagAATGCTACCCAGAAAAGCCAGAAGGTTTTTGTCCATGTCCCATCTGAAATT
EST: AGCTAGGAATTCCCACCAAGGCTTATTATGCTGTTGAGGAAGTGAAAGAG AATGCTACCCAGAAAAGCCAGAAGGTTTTTGTCCATGTCCCATCTGAAATT
genomic: AGCTAGGAATTCCCACCAAGGCTTATTATGCTGTTGAGGAAGTGAAAGAGgtaagaacta ... atggttacagAATGCTACCCAGAAAAGCCAGAAGGTTTTTGTCCATGTCCCATCTGAAATT
gacatttcattaaaatgacttgttggtttactctaatgcttgcttatggttacagAATGCTACCCAGAAAAGCCAGAAGGTTTTTGTCCATGTCCCATCTGAAATTGCTGCTCATGAAGTTGAGGAAATTG
ctctaat putative branch site (score: 3)
ttcattaaaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagaactaagaacatctttaatgttttcttatttagctggtgcatgattgatcagttacattttattcagcttgaatcttgctgacttactgtctaagacatttcattaaaatgacttgttggtttactctaatgcttgcttatggttacagAATGCTACCCAGAAAAGCCAGAAGGTTTTTGTCCATGTCCCATCTGAAATTGCTGCTCATGAAGTTGAGGAAATTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT