1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...ttctcatttaacataattttgtttttgttttgggaaatcaaaggaagaactaatcattggcatgtgatgtatggattgacaattgctgactttattgtagGTCTTTGGTGCTCTCTTTATTGCAAAACTATTGTGTGTTCCTATAGTGATGTCTTATCACACCCATGTTCCAGT
species | Vitis vinifera |
transcript | Vv08s0007g01940.t01 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
agaactaatcattggcatgtgatgtatggattgacaattgctgactttattgtagGTCTTTGGTGCTCTCTTTATTGCAAAACTATTGTGTGTTCCTATAGTGATGTCTTATCACACCCATGTTCCAGT
tgctgac putative branch site (score: 2)
ctttatt CT-rich tract
tttattgta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttctcatttaacataattttgtttttgttttgggaaatcaaaggaagaactaatcattggcatgtgatgtatggattgacaattgctgactttattgtagGTCTTTGGTGCTCTCTTTATTGCAAAACTATTGTGTGTTCCTATAGTGATGTCTTATCACACCCATGTTCCAGT
- - - - -aacataa
- - - - - - - - - - - - - -ttttggg
- - - - - - - - - - - - - - - - - aaatcaa
- - - - - - - - - - - - - - - - - - - - - ggaagaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - catgtga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgtatgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgctgac