1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtggaacatcttgcccttatatgcatattatttattagtttctttataatttatttaagtttcatttgtttgatgtctttatccaattttactaatttgtatctaaaatttagGAGGGAGTTGGAGCTCTGTGGACTGGGCTTGGACCGAATGTAGCGAGAAATGCTATTATAAATGCTGCTGAACTAGCCAGTTATGATCAAGTGAAGCAG
species | Vitis vinifera |
transcript | Vv08s0007g01700.t01 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: CAAGACGCTATTCCGGATCATTGAATGCTTATTCTACAATAGTGAGACAG GAGGGAGTTGGAGCTCTGTGGACTGGGCTTGGACCGAATGTAGCGAGAAATEST: gi|33407463|gb|CF213090.1|CF213090
genomic: CAAGACGCTATTCCGGATCATTGAATGCTTATTCTACAATAGTGAGACAGgtggaacatc ... taaaatttagGAGGGAGTTGGAGCTCTGTGGACTGGGCTTGGACCGAATGTAGCGAGAAAT
EST: AATAGTGAGACAG GAGGGAGTTGGAGCTCTGTGGACTGGGCTTGGACCGAATGTAGCGAGAAATEST: gi|161718697|gb|FC066335.1|FC066335
genomic: AATAGTGAGACAGgtggaacatc ... taaaatttagGAGGGAGTTGGAGCTCTGTGGACTGGGCTTGGACCGAATGTAGCGAGAAAT
EST: CAAGACGCTATTCCGGATCATTGAATGCTTATTCTACAATAGTGAGACAG GAGGGAGTTGGAGCTCTGTGGACTGGGCTTGGACCGAATGTAGCGAGAAAT
genomic: CAAGACGCTATTCCGGATCATTGAATGCTTATTCTACAATAGTGAGACAGgtggaacatc ... taaaatttagGAGGGAGTTGGAGCTCTGTGGACTGGGCTTGGACCGAATGTAGCGAGAAAT
gtttcatttgtttgatgtctttatccaattttactaatttgtatctaaaatttagGAGGGAGTTGGAGCTCTGTGGACTGGGCTTGGACCGAATGTAGCGAGAAATGCTATTATAAATGCTGCTGAACTAGCCAGTTATGATCAAGTGAAGCAG
tttatccaattttact TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtggaacatcttgcccttatatgcatattatttattagtttctttataatttatttaagtttcatttgtttgatgtctttatccaattttactaatttgtatctaaaatttagGAGGGAGTTGGAGCTCTGTGGACTGGGCTTGGACCGAATGTAGCGAGAAATGCTATTATAAATGCTGCTGAACTAGCCAGTTATGATCAAGTGAAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC