Sequence
atgc intronic sequence ATGC exonic sequencegtatattatttttacctatcttgtttttcaatttatttttatgactggctcttatttgtggggagtggttgacagGATGGTAATCCCAGACTGTCTTGCTTTGGCCTTATGAAGAATAGTAGAGATGGCAAGAGTTACAGCACCAATTTGGCTTTCACCCCTCCAGAGTATTTGA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv08s0007g01520.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA03G15830.1 (Glycine max), 3'ss of exon 4
----------------------gtatattatttttacctatcttgtttttcaatttatttttatgactggctcttatttgtggggagtggttgacagGATGGTAATCCCAGACTGTCTTGCTTTGGCCTTATGAAGAATAGTAGAGATGGCAAGAGTTACAGCACCAATTTGGCTTTCACCCCTCCAGAGTATTTGA
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gtataattggtggttaataaatgcttccaagttctaactaaatcttgtttc--ttcctatttgtaacttggactggcttgtgttgtatac---acagGATGCTAATCCCAGGTTGTCTTGCTTTGGTCTCATGAAGAACAGTAGAGATGGCAAGAGTTACAGTACAAACCTGGCTTTCACCCCTCCTGAGTACTTAA
upper sequence: Vv08s0007g01520.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA01G26690.1 (Glycine max), 3'ss of exon 6
----------------------gtatattatttttacctatcttgtttttcaatttatttttatgactggctcttatttgtggggagtggttgacagGATGGTAATCCCAGACTGTCTTGCTTTGGCCTTATGAAGAATAGTAGAGATGGCAAGAGTTACAGCACCAATTTGGCTTTCACCCCTCCAGAGTATTTGA
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gtataactggtgtttaataaatgcttccaagttctaactaaaccttgtttc--ttcctatttgtaacttggattggcttgtgatgtat---caacagGATGCTAATCCCAGGTTGTCTTGCTTTGGACTCATGAAGAAGAGCAGAGATGGCAAGAGTTACAGCACAAACCTGGCTTTCACCCCTCCTGA--------
upper sequence: Vv08s0007g01520.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: PP1S156_133V6.1 (Physcomitrella patens), 3'ss of exon 4
----------------gtatattatttttacctatcttgt---ttttcaatttatttttatgactggct--cttatttgtggggagtgg----ttgacagGATGGTAATCCCAGACTGTCTTGCTTTGGCCTTATGAAGAATAGTAGAGATGGCAAGAGTTACAGCACCAATTTGGCTTTCACCCCTCCAGAGTATTTGA
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ttttgtggtttttcctttgaactagctctgcttggtatgtggatgttaactaaagtctagaaaacggttagtttatttatggttatctgcaatttatcagGATGGAGACCCACGTCTCTCCTGTTTTGGGCTCATGAAGAACAGCAGAGATGGGAAAAGCTACAGCACCAATCTGGCTTACACTCCTCCTGAGTACTTAA
upper sequence: Vv08s0007g01520.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: PP1S9_348V6.1 (Physcomitrella patens), 3'ss of exon 4
----------------gtatattatttttacctatcttgtt--tttcaatttatttttatgactggctcttatttgtggggagt-------ggttgacagGATGGTAATCCCAGACTGTCTTGCTTTGGCCTTATGAAGAATAGTAGAGATGGCAAGAGTTACAGCACCAATTTGGCTTTCACCCCTCCAGAGTATTTGA
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tcgtgtgggtttcctttggaaatagttctacttagtacgtggatttcaactgcagttaatagaatgctcagtatattaacgattctctacgattttgtagGACGGAGACCCACGTCTCTCCTGTTTTGGGCTCATGAAGAACAGCAGAGATGGAAAAAGCTACAGCACCAATTTGGCTTACACTCCTCCTGAGTACTTGAMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110687454|gb|EE064880.1|EE064880EST: GACGGGCCTTGTATCATGATCTTAATGCCTACAGAGTCTTATTTGATCAG GATGGTAATCCCAGACTGTCTTGCTTTGGCCTTATGAAGAATAGTAGAGAT
genomic: GACGGGCCTTGTATCATGATCTTAATGCCTACAGAGTCTTATTTGATCAGgtatattatt ... tggttgacagGATGGTAATCCCAGACTGTCTTGCTTTGGCCTTATGAAGAATAGTAGAGAT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ttgtttttcaatttatttttatgactggctcttatttgtggggagtggttgacagGATGGTAATCCCAGACTGTCTTGCTTTGGCCTTATGAAGAATAGTAGAGATGGCAAGAGTTACAGCACCAATTTGGCTTTCACCCCTCCAGAGTATTTGA
tttcaatttattttta TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
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gtatattatttttacctatcttgtttttcaatttatttttatgactggctcttatttgtggggagtggttgacagGATGGTAATCCCAGACTGTCTTGCTTTGGCCTTATGAAGAATAGTAGAGATGGCAAGAGTTACAGCACCAATTTGGCTTTCACCCCTCCAGAGTATTTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA