1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...ttgaacatggttgtttcttgtttaactggatttcagtatgtgtttgccattttttttttcgttctgtaagttataactaatgcacacattctctttccagGGAATTCTATATGGATCAGTTGGGTTTGCCTGTGGTCTTATTGGTCAAGGCATCGCAAATTTGATCATGACTGCCAAGCG
species | Vitis vinifera |
transcript | Vv08s0007g01250.t01 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: CAGGTTGCAGATTTTCTGTAAAGCAGAGAATTGCTACATACTTCTTTAAG GGAATTCTATATGGATCAGTTGGGTTTGCCTGTGGTCTTATTGGTCAAGGCEST: gi|349825663|gb|FQ421762.1|FQ421762
genomic: CAGGTTGCAGATTTTCTGTAAAGCAGAGAATTGCTACATACTTCTTTAAGgtgtgacaat ... ctctttccagGGAATTCTATATGGATCAGTTGGGTTTGCCTGTGGTCTTATTGGTCAAGGC
EST: CAGGTTGCAGATTTTCTGTAAAGCAGAGAATTGCTACATACTTCTTTAAG GGAATTCTATATGGATCAGTTGGGTTTGCCTGTGGTCTTATTGGTCAAGGC
genomic: CAGGTTGCAGATTTTCTGTAAAGCAGAGAATTGCTACATACTTCTTTAAGgtgtgacaat ... ctctttccagGGAATTCTATATGGATCAGTTGGGTTTGCCTGTGGTCTTATTGGTCAAGGC
gccattttttttttcgttctgtaagttataactaatgcacacattctctttccagGGAATTCTATATGGATCAGTTGGGTTTGCCTGTGGTCTTATTGGTCAAGGCATCGCAAATTTGATCATGACTGCCAAGCG
aactaat putative branch site (score: 2)
cacattctctttcc putative PPT
taagttataactaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttgaacatggttgtttcttgtttaactggatttcagtatgtgtttgccattttttttttcgttctgtaagttataactaatgcacacattctctttccagGGAATTCTATATGGATCAGTTGGGTTTGCCTGTGGTCTTATTGGTCAAGGCATCGCAAATTTGATCATGACTGCCAAGCG
- gaacatg
- - - - - - - - - - - - - - - - - -gtatgtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aactaat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cacacat