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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaagaaatcatcttccttttaaccttgttggtgtgcactctagcaatagtaccaggcctttcaatttccttttttgctgtacactgggttactattgccattcccattagccatattatttgccttcaaagatttgggaccttcacgttcattgtactactcgttactcttgcagACCAAGGCTAGTGATGCTGCAAAGGCTGGGAAGAAGAAATGAGCTTCTAGGGATTTTGAACTTGCTTCAGTGCCAATTACACAACAAGTTGTCTTTTTTG

Basic information

species Vitis vinifera
transcript Vv07s0151g00900.t01
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110374676|gb|EC939597.1|EC939597
EST:     AAATGAAGGAAAGGAAGAACAGGGCCAAGAAGGTCCGAGGAGTGAAGAAG                         ACCAAGGCTAGTGATGCTGCAAAGGCTGGGAAGAAGAAATGAGCTTCTAGG
genomic: AAATGAAGGAAAGGAAGAACAGGGCCAAGAAGGTCCGAGGAGTGAAGAAGgtaaagaaat ... actcttgcagACCAAGGCTAGTGATGCTGCAAAGGCTGGGAAGAAGAAATGAGCTTCTAGG
EST: gi|110417256|gb|EC983296.1|EC983296
EST:     AAATGAAGGAAAGGAAGAACAGGGCCAAGAAGGTCCGAGGAGTGAAGAAG                         ACCAAGGCTAGTGATGCTGCAAAGGCTGGGAAGAAGAAATGAGCTTCTAGG
genomic: AAATGAAGGAAAGGAAGAACAGGGCCAAGAAGGTCCGAGGAGTGAAGAAGgtaaagaaat ... actcttgcagACCAAGGCTAGTGATGCTGCAAAGGCTGGGAAGAAGAAATGAGCTTCTAGG
EST: gi|110416717|gb|EC982715.1|EC982715
EST:     AAATGAAGGAAAGGAAGAACAGGGCCAAGAAGGTCCGAGGAGTGAAGAAG                         ACCAAGGCTAGTGATGCTGCAAAGGCTGGGAAGAAGAAATGAGCTTCTAGG
genomic: AAATGAAGGAAAGGAAGAACAGGGCCAAGAAGGTCCGAGGAGTGAAGAAGgtaaagaaat ... actcttgcagACCAAGGCTAGTGATGCTGCAAAGGCTGGGAAGAAGAAATGAGCTTCTAGG
EST: gi|110424183|gb|EC990539.1|EC990539
EST:     AAATGAAGGAAAGGAAGAACAGGGCCAAGAAGGTCCGAGGAGTGAAGAAG                         ACCAAGGCTAGTGATGCTGCAAAGGCTGGGAAGAAGAAATGAGCTTCTAGG
genomic: AAATGAAGGAAAGGAAGAACAGGGCCAAGAAGGTCCGAGGAGTGAAGAAGgtaaagaaat ... actcttgcagACCAAGGCTAGTGATGCTGCAAAGGCTGGGAAGAAGAAATGAGCTTCTAGG
EST: gi|26259430|gb|CA810493.1|CA810493
EST:     AAATGAAGGAAAGGAAGAACAGGGCCAAGAAGGTCCGAGGAGTGAAGAAG                         ACCAAGGCTAGTGATGCAGCAAAGGCTGGGAAGAAGAAATGAGCTTCTAGG
genomic: AAATGAAGGAAAGGAAGAACAGGGCCAAGAAGGTCCGAGGAGTGAAGAAGgtaaagaaat ... actcttgcagACCAAGGCTAGTGATGCTGCAAAGGCTGGGAAGAAGAAATGAGCTTCTAGG
EST: gi|26260184|gb|CA811247.1|CA811247
EST:     AAATGAAGGAAAGGAAGAACAGGGCCAAGAAGGTCCGAGGAGTGAAGAAG                         ACCAAGGCTAGTGATGCAGCAAAGGCTGGGAAGAAGAAATGAGCTTCTAGG
genomic: AAATGAAGGAAAGGAAGAACAGGGCCAAGAAGGTCCGAGGAGTGAAGAAGgtaaagaaat ... actcttgcagACCAAGGCTAGTGATGCTGCAAAGGCTGGGAAGAAGAAATGAGCTTCTAGG
EST: gi|110423807|gb|EC990158.1|EC990158
EST:     AAATGAAGGAAAGGAAGAACAGGGCCAAGAAGGTCCGAGGAGTGAAGAAG                         ACCAAGGCTAGTGATGCTGCAAAGGCTGGGAAGAAGAAATGAGCTTCTAGG
genomic: AAATGAAGGAAAGGAAGAACAGGGCCAAGAAGGTCCGAGGAGTGAAGAAGgtaaagaaat ... actcttgcagACCAAGGCTAGTGATGCTGCAAAGGCTGGGAAGAAGAAATGAGCTTCTAGG
EST: gi|71877383|gb|DT026438.1|DT026438
EST:     AAATGAAGGAAAGGAAGAACAGGGCCAAGAAGGTCCGAGGAGTGAAGAAG                         ACCAAGGCTAGTGATGCTGCAAAGGCTGGGAAGAAGAAATGAGCTTCTAGG
genomic: AAATGAAGGAAAGGAAGAACAGGGCCAAGAAGGTCCGAGGAGTGAAGAAGgtaaagaaat ... actcttgcagACCAAGGCTAGTGATGCTGCAAAGGCTGGGAAGAAGAAATGAGCTTCTAGG
EST: gi|110361207|gb|EC924663.1|EC924663
EST:     AAATGAAGGAAAGGAAGAACAGGGCCAAGAAGGTCCGAGGAGTGAAGAAG                         ACCAAGGCTAGTGATGCAGCAAAGGCTGGGAAGAAGAAATGAGCTTCTAGG
genomic: AAATGAAGGAAAGGAAGAACAGGGCCAAGAAGGTCCGAGGAGTGAAGAAGgtaaagaaat ... actcttgcagACCAAGGCTAGTGATGCTGCAAAGGCTGGGAAGAAGAAATGAGCTTCTAGG
EST: gi|77581193|gb|DV219524.1|DV219524
EST:     AAATGAAGGAAAGGAAGAACAGGGCCAAGAAGGTCCGAGGAGTGAAGAAG                         ACCAAGGCTAGTGATGCTGCAAAGGCTGGGAAGAAGAAATGAGCTTCTAGG
genomic: AAATGAAGGAAAGGAAGAACAGGGCCAAGAAGGTCCGAGGAGTGAAGAAGgtaaagaaat ... actcttgcagACCAAGGCTAGTGATGCTGCAAAGGCTGGGAAGAAGAAATGAGCTTCTAGG
EST: gi|30329174|gb|CD012436.1|CD012436
EST:     AAATGAAGGAAAGGAAGAACAGGGCCAAGAAGGTCCGAGGAGTGAAGAAG                         ACCAAGGCTAGTGATGCAGCAAAGGCTGGGAAGAAGAAATGAGCTTCTAGG
genomic: AAATGAAGGAAAGGAAGAACAGGGCCAAGAAGGTCCGAGGAGTGAAGAAGgtaaagaaat ... actcttgcagACCAAGGCTAGTGATGCTGCAAAGGCTGGGAAGAAGAAATGAGCTTCTAGG
EST: gi|110371203|gb|EC935035.1|EC935035
EST:     AAATGAAGGAAAGGAAGAACAGGGCCAAGAAGGTCCGAGGAGTGAAGAAG                         ACCAAGGCTAGTGATGCTGCAAAGGCTGGGAAGAAGAAATGAGCTTCTAGG
genomic: AAATGAAGGAAAGGAAGAACAGGGCCAAGAAGGTCCGAGGAGTGAAGAAGgtaaagaaat ... actcttgcagACCAAGGCTAGTGATGCTGCAAAGGCTGGGAAGAAGAAATGAGCTTCTAGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgccttcaaagatttgggaccttcacgttcattgtactactcgttactcttgcagACCAAGGCTAGTGATGCTGCAAAGGCTGGGAAGAAGAAATGAGCTTCTAGGGATTTTGAACTTGCTTCAGTGCCAATTACACAACAAGTTGTCTTTTTTG
                                           ttactctt  CT-rich tract
       aaagattt  TA-rich tract